barSeed - Barley Seed Development Database

Probe CUST_12228_PI390587928

Source Contig U35_20927

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12228_PI390587928	Hv_44K_v2	TTTAACACGGGAGGAGTGAGTCAGTGAGTCAGTGAGCCATGGAGGCCACGACGAAGAACC	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357921	2137	2e-24	31 - 90	100	60 / 60	plus	ABC39733 ABC42189
MLOC	MLOC_10665.1	1426	2e-24	365 - 424	100	60 / 60	plus	ABC39733
MLOC	MLOC_10665.2	2427	2e-24	365 - 424	100	60 / 60	plus	ABC39733 ABC42189
JLOC1	JLOC1_6995.1	2289	8e-25	167 - 226	100	60 / 60	plus
Harvest21	ABC21033	544	3e-25	24 - 83	100	60 / 60	plus
Harvest35	U35_20927	645	3e-25	56 - 115	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_20927 645 Hv_44K_v2
TCGAGCACTGTTGGCCTCCTGGAGCTAGGCTCCTTCCGTTCAGTCTACCACACAATTTAA
CACGGGAGGAGTGAGTCAGTGAGTCAGTGAGCCATGGAGGCCACGACGAAGAACCAAGAG
ACGGGCGCCGGCGACAATAGCGCGCGGCCCGCGCCGCCGGCGCTGCCGTGGTCGGTGAGG
CTCCAGCTGTTCGCGCTCGTCACCACCAACGACATCGCGCAGCGCCGCGACGGGACCGTA
AACCGCTTCCTCTTCTCCTTCGGCGACCGGCAGTCGCCCGCGAGGCCTCGCCCGGACGCG
CACGGCGTACGCTCCGCCGACGTCACCGTCGACGCCTCCCGAAGCCTCTGGGCGCGCGTC
TACTCCCCTGCGGCGGCGGCGGCCGGGCAGACCCCGCTCCCCGTCCTCGTCTACTTCCAC
GGCGGCGGCTTCACGCTGCTCTCCGCTGCCTCCACGCCCATCGACGGCATGTGCCGCCGC
TTCTGCCGCGAGCTGGGCGCCGTGGTCGTCTCCGTCAACTACCGCCTCGCGCCCGAGCAC
CGCTACCCGGCCGCCTACGACGACTGCGTGGACGTGCTCCGCTACCTCGGCGACCCCGGC
CTCCCGGCGGACGTCTCCGTCCCGGTCGACCTCTCCCGCTGCTTC

Homology of Contig U35_20927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44890.1	364	7e-87	protein\|gibberellin receptor GID1L2, putative, expressed
Brachypodium v1_2	Bradi1g19750.1	361	1e-81
Arabidopsis v10	None