barSeed - Barley Seed Development Database

Probe CUST_12218_PI390587928

Source Contig U35_18613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12218_PI390587928	Hv_44K_v2	CTTGTTTCGCCACTGTAATATTGTTGCAAGGGAAACAAAACAGTATTCATATGGTAAACT	965	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.408	2.118	1.031	0.807	0.288	0.473
Raw	551.243	779.134	325.876	418.361	51.173	90.212

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248466.1	1941	2e-24	1840 - 1899	100	60 / 60	plus	ABC09747
JLOC1	JLOC1_7747.1	648	8e-25	451 - 510	100	60 / 60	plus
Harvest21	ABC09747	1043	3e-25	966 - 1025	100	60 / 60	plus	ABC09747
Harvest35	U35_18613	1043	3e-25	966 - 1025	100	60 / 60	plus

Contig Sequence (1043 bp)

>U35_18613 1043 Hv_44K_v2
GGTCCGCTCCTCCTTATCTCAGTCCCCATTGCATCTGATAATCCAAGTGCCCTCATCAGT
AAGAAAGAAAATCTGGTAATCCAAACCCTGACATGGCTTGCAGGCCGACCGTGTCCAACC
CCTCCGCACTCACGCCGGCGCCGCGCCGACGCGTCGTCCCTGCCCACAGCAGCACTAGGG
GACGCGTTGCCTGCCCCCTCCGCTCCAGCTCCGCGGGTACGGTCAGACTCGGCGTGCGCC
GCGCCCCTGCCGCCGCCTTCGTCGTCCGCGCGGCGGCTGCCGAGGGTGACTTGGATCTCC
AGGCTAAGGTGACGAGCAAATGCTTCTTCGACGTCGAGATCGGCGGGGATAACGCAGGCA
AGGTGGTAATTGGGCTCTTCGGCGAGGTCGTCCCCAGGACCGTCGATAACTTCCGCACCT
TGTGCACTGGAGACAAAGGTTATGGATACAAGGGCTGCTCCTTCCACCGAATTATCAAGG
ATTTCATGATTCAGGGCGGGGATTTCCAGAACAACAATGGTACTGGTGGGAGAAGTATTT
ATGGTGAATGCTTTGATGATGAAAATTTTACATTAAAGCATGTTGGTCCTGGTGTACTAA
GCATGGCCAACGCTGGCCCTGACACAAATGGAAGTCAGTTTTTTATTTGCACTGTGAAGA
CACCATGGTTGGACGACCGTCATGTTGTGTTTGGTCATGTGTTGGAGGGCATGGACGTTG
TGAGGGAGCTTGAATCGCAAGAAACCAGCAGGTCCGATATCCCCAAGCAGCCATGTCGAA
TCGTGAATTGTGGCGAGCTGCCCTTGGACGGCTGAATAGGTCAATAGCTCAGGGCTCAGG
GTTGGGTTTATTACCCCGCACATCCTTCTTATTAATTTCTGCGGCTATAATCTCTTGGGA
AAGGGTTACTTGAATCTCCAGCCAGCCAGTCTGATTTTTCTTTGAGTAATGAAATCTCAC
GAGACCTTGTTTCGCCACTGTAATATTGTTGCAAGGGAAACAAAACAGTATTCATATGGT
AAACTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g18210.1	239	5e-125	protein\|peptidyl-prolyl cis-trans isomerase, putative, expressed
Brachypodium v1_2	Bradi2g11060.1	240	1e-134
Arabidopsis v10	AT3G62030.2	313	2e-91	\| Symbols: ROC4 \| rotamase CYP 4 \| chr3:22973004-22975139 FORWARD LENGTH=313