barSeed - Barley Seed Development Database

Probe CUST_12214_PI390587928

Source Contig U35_32909

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12214_PI390587928	Hv_44K_v2	AAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATA	67	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61671.5	3356	2e-24	2268 - 2327	100	60 / 60	plus	ABC08814
MLOC	MLOC_61671.8	1105	2e-24	28 - 87	100	60 / 60	plus	ABC08814
MLOC	MLOC_61671.9	1219	2e-24	22 - 81	100	60 / 60	plus	ABC08814
JLOC1	JLOC1_40302.20	3703	8e-25	2487 - 2546	100	60 / 60	plus
JLOC1	JLOC1_40302.19	3514	8e-25	2401 - 2460	100	60 / 60	plus
JLOC1	JLOC1_40302.15	3446	8e-25	2333 - 2392	100	60 / 60	plus
JLOC1	JLOC1_40302.12	4025	8e-25	2809 - 2868	100	60 / 60	plus
JLOC1	JLOC1_40302.11	3943	8e-25	2813 - 2872	100	60 / 60	plus
JLOC1	JLOC1_40302.8	3472	8e-25	2342 - 2401	100	60 / 60	plus
JLOC1	JLOC1_40302.5	3456	8e-25	2343 - 2402	100	60 / 60	plus
JLOC1	JLOC1_40302.4	3612	8e-25	2482 - 2541	100	60 / 60	plus
JLOC1	JLOC1_40302.3	3477	8e-25	2347 - 2406	100	60 / 60	plus
JLOC1	JLOC1_40302.2	3612	8e-25	2482 - 2541	100	60 / 60	plus
Harvest35	U35_32909	725	3e-25	68 - 127	100	60 / 60	minus

Contig Sequence (725 bp)

>U35_32909 725 Hv_44K_v2
TCATTGATGTCAAGCACCACACTTGGGAGCAGTTGATGGTAGGGTAGGAGAGAGCAGAGA
TGGTCACTATTTTAACAGCAGCTTTGGGAGGTCAGGGAGATACCTTATCCACCAGACTTG
AGACCTTCTTATTAGATCTCAGTGATGATGCAACAGCAACAGGTCGCTTCTTAGTACGAG
GAACTTTAGTCTGATTAGTGGTACTAGTAGAAGCTAGAGTAGAACTACCATGTACTGTTG
GTGCTGAAGCTGAGGCTGCCAGCGGCCGCTACAAACAGTCGTGGTACCATAACATAGGAA
TGCCTGTTCCGATTACATAGCATCTAATAAATCAGCTACAAGTATACTAAAGATAGTTAG
AACTGCAACTGATTAAGGAAATACAGTTCTCTGCTCCTCGTGGTCGCTGACCATCCAAAT
GCTTGTGTATATCATCCTTCTTCACATGGCATTGCTTGCAGGATTATCCTTGAGCACAGG
AAATTTGGGAGGCCAGATCATCATAAGAGGATGGATGTCACCCAATTGCAGTTCTTCTTC
CGTCATGTCATACACTTTACGCAACTGCATGGACTTGACATCTAAGTGTAGCGCGCATCG
ACCAGCGGCCGCTGGCGAGAGGCGGGGGGAGAAGTTCTGCAGGCAGCATGAGTGGGGACT
TCAGCCACCCCTTGTCACCAGCCACTGTAGCATTCTTCAGTAAAAAAACAGCCGACACTG
CATCA

Homology of Contig U35_32909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None