barSeed - Barley Seed Development Database

Probe CUST_12205_PI390587928

Source Contig U35_20934

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12205_PI390587928	Hv_44K_v2	TCTCGACTCCTCAGAACAACTTCAGGATTTTTGTGAATGGCTCCTTAGGTTTTGGTGGCA	1058	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.302	0.581	1.431	1.726	0.976	0.976
Raw	17.234	52.483	110.964	215.260	41.893	45.986

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360183	2004	2e-24	895 - 954	100	60 / 60	plus	None
MLOC	MLOC_38910.2	1469	2e-24	370 - 429	100	60 / 60	plus	None
MLOC	MLOC_38910.1	2048	2e-24	949 - 1008	100	60 / 60	plus	None
JLOC1	JLOC1_25340.1	2009	8e-25	843 - 902	100	60 / 60	plus
Harvest21	ABC16142	1174	3e-25	1059 - 1118	100	60 / 60	plus
Harvest35	U35_20934	1174	3e-25	1059 - 1118	100	60 / 60	plus

Contig Sequence (1174 bp)

>U35_20934 1174 Hv_44K_v2
CCGGCATGAGCATCGGAGCGCCCCCCGTCTCACTGGAACCACATGCAAACGCCCCGTCCG
CGTGGCGTCCACTCTTCCTCCACGTTTCGGCTTCCCTCCCGGGAATCTGCAGCAGCCTTC
CTTTTTCCTCCCTCCGGAGTCCGGATTCCTGATTCCTCCAACAACGCAACTGGGGCGGTA
GCGGTAGCGGTAGCGGTAGCAGCAGCAGCACTAGCGAGCGAGCGAGCGGCAGCGGCGGCG
ACACGAGAGCGCCGGCCCGCCCCCGCCGCGGGCTGCAGCCGCCCTCCTCTCCTCCGGCCA
CCGGGACCGCGCCCTGGTCCGACGCCAGCACCCGCGCGGCTCTGCTCCTCGCCTCCGCTG
ATTCTGGGCGGAGATGGAGGCCGNGCTGCAGGCCGGAGACGCCGCGAACTGGGTCTACAA
GGGAGAGGGCGCCGCGAATCTCATCCTCAGCTACACCGGCTCCTCCCCTTCCATGCTTGG
CAAGGTACTGCGAGCCAAGAAGGTCCTAAATGACAAGGCACAACCAGCACCAAACTGTGT
AAACTTCTCAACCTACGAGCAGCTCGTGTGGGGTCAGATCCCAGAATTGGTCGAGTCTGT
CAAGCAAGGTTCTGTGGCACAAGCCTATGCAGTACATGTCATGAGCCCACATCTGGGGCA
CGATCATGTCGATGGTGGGGTTCGTGTCCCTGTGTCTAAGGATTTTCTGGAGATTGTTGG
AAAGAATGTGCTCAGTGCCCGTCCTTCTTGGCGAGTGAATGCAAGCGCAATTGATACCAG
CGCTGATTCTGCCCTTCTAATTTCTGACCACTCCCTATTTTCTGGAAAGCCTAGAGGTAG
CAGTTGTATTGCAGTGGAGATAAAGGCCAAATGTGGGTTTCTTCCATCATCAGAATATAT
ATCAAGGGAAAATGCTATTAAGAAACAAGTAACACGGTACAAGATGCATCAACACCTCAA
ATTTCATCAGGGGCAGATATCGAAGACAAGTGAATACGACCCCCTTGATCTATTTTCGGG
GTCAAAAGAAAGAATACGCACGGCCATCAAGTCATTTTTCTCGACTCCTCAGAACAACTT
CAGGATTTTTGTGAATGGCTCCTTAGGTTTTGGTGGCATGGGAGGGGGGGCTGATAAGGC
CCTTGCTAAGGAAACAAAAAAGGGCCTGGAAAAT

Homology of Contig U35_20934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56580.1	446	2e-134	protein\|inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed
Brachypodium v1_2	Bradi5g24890.1	455	1e-153
Arabidopsis v10	AT5G42810.1	451	2e-80	\| Symbols: ATIPK1, IPK1 \| inositol-pentakisphosphate 2-kinase 1 \| chr5:17167073-17169337 FORWARD LENGTH=451