- Probe CUST_12202_PI390587928
- Source Contig U35_47152
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12202_PI390587928 | Hv_44K_v2 | CATTTCTATGATCCTGCAACTGGAGCTCTCAAGCAGTTGCCTTCAAACGTAAAGCTCATG | 560 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.864 | 1.273 | 1.077 | 0.705 | 0.574 | 0.414 |
| Raw | 731.044 | 674.382 | 575.465 | 519.215 | 165.811 | 133.332 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61904.6 | 4850 | 2e-24 | 3167 - 3226 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61904.4 | 4980 | 2e-24 | 3263 - 3322 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61904.1 | 4881 | 2e-24 | 3164 - 3223 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61904.5 | 4757 | 2e-24 | 3207 - 3266 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61904.3 | 4703 | 2e-24 | 3162 - 3221 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61904.2 | 4947 | 2e-24 | 3264 - 3323 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_40476.2 | 5286 | 8e-25 | 3163 - 3222 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40476.1 | 5389 | 8e-25 | 3266 - 3325 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47981 | 635 | 3e-25 | 561 - 620 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47152 | 635 | 3e-25 | 561 - 620 | 100 | 60 / 60 | plus |
Contig Sequence (635 bp)
>U35_47152 635 Hv_44K_v2 GGAAGGGCCTGCCGATGGAATATTTATGTAGAAGCCTGTACTGGCCTGAGAAGGGTGCTT TCTTCTCTCTACCTCGTGATAAACTGGGTCTTGGTAATGGTGTCTGTGGCTCTTGTGAGC ACAGAGAACCGGACTGTGATGAATTAAGAATACTTTCCAAGAGCAGCTTCATTTACAGAA AGGTAACCTATAGTGTCCATGACTTCTTATACATCAGGCCTGAGTTTTTCTCCCAAGACG AGGATCGTGGCACCTACAAGGCAGGAAGAAACATTGGCCTGAAGCCCTATGCAGTTTGCC ATCTGCTGGATGTCTGTGGACCTGCTGGTTCTAAAAAAGTTGATACTGCATCAACAAAAG TCAGTGTTCGAAGATTTTATAGACCAGATGACATTTCAAATGCTAAAGCTTATACATCTG ATATCAGAGAGGTATACTATAGTGAAGATGTAATTAATGTGCCTGTGGATATGATAGAGG GAAAATGTGAGGTCAGAAAGAAGATAGATATCTCAAATTCAGACCTTCCAGTAATGGTTG AACATGTATTCTTCTGTGAGCATTTCTATGATCCTGCAACTGGAGCTCTCAAGCAGTTGC CTTCAAACGTAAAGCTCATGTCTGTGGCTCGGAAG
Homology of Contig U35_47152 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g55287.1 | 1493 | 6e-128 | |
| Arabidopsis v10 | AT4G14140.2 | 1545 | 2e-59 | | Symbols: DMT2 | DNA methyltransferase 2 | chr4:8146345-8152131 FORWARD LENGTH=1545 |