barSeed - Barley Seed Development Database

Probe CUST_12201_PI390587928

Source Contig U35_47153

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12201_PI390587928	Hv_44K_v2	TATTTGAGGGATCAAGTTGATGGCACTGAACTAGGTAAGTTGGCTCGCAGGAGAAAGATA	590	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10012.1	2280	2e-24	1037 - 1096	100	60 / 60	plus	ABC44573
JLOC1	JLOC1_6522.1	2191	8e-25	1013 - 1072	100	60 / 60	plus
Harvest21	ABC47982	655	3e-25	591 - 650	100	60 / 60	plus
Harvest35	U35_47153	655	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_47153 655 Hv_44K_v2
GGCGGACCTCTGATCAGATCACCTTGTCTGGAGAAGGGTATGTGATGATCACCCTTGACG
AGGAAGGTGGGGCAGAGTTCACCTCTCCTGCCGGTCGATCCTCCGGATTTGAGGCTGAAC
AGCAGGAGCAGGAGACGTTCCCTCCTTTGCCAGATGATATCATTTCTGTAGATCCTCCTC
TCCAAGGCAGTTTTTCAGTGACCCACCAAGAAACACCAGAAATATTGCGTCGAGCAACTG
ATAGTGTGTCAAGGTTTGAAGATGTTATTGATGGCGGTGACCTCATGGAGGAAGATCCGT
CGCCGTTCACAGAAAAGGTTACCACGCCACAACCAATGTACTCACCTTTATCACCTGTGC
TTCGGACGTCCATTCCCAACGTACCAGCCCGTATCAGCCATGAGCCTGTTGATGAAGAAG
ATCTGGAACCAGCAGGTGGCACTGGAATCTTGGCACCTGCAGCATTTATCCTTGAATCAT
CTCCACCACCTCAAGTACAAGTACAAGGTAACAGGAGAAAGAGAAGGGCGAATGTACAAG
AGAACAGGAGACGGCCTAGAATTGATGATGAAATCGGGCTCTCCAATGATTATTTGAGGG
ATCAAGTTGATGGCACTGAACTAGGTAAGTTGGCTCGCAGGAGAAAGATAATGCC

Homology of Contig U35_47153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None