barSeed - Barley Seed Development Database

Probe CUST_12200_PI390587928

Source Contig U35_47154

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12200_PI390587928	Hv_44K_v2	AATCAGTCAGGAATCGACTGTGCTTTTGTACATAGACATGGAGATCTTTGAGCTTGTTTC	21	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.979	2.015	1.281	0.675	0.271	0.174
Raw	70.103	116.491	62.767	52.767	7.025	3.048

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57599.1	2280	7e-23	16 - 76	98	60 / 61	minus	None
MLOC	MLOC_57599.2	2226	7e-23	5 - 65	98	60 / 61	minus	None
JLOC1	JLOC1_37353.1	2312	4e-23	2175 - 2235	98	60 / 61	plus
Harvest35	U35_47154	705	3e-25	22 - 81	100	60 / 60	minus

Contig Sequence (705 bp)

>U35_47154 705 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAGAAACAAGCTCAAAGATCTCCATGTCTATGTACAAAAGC
ACAGTCGATTCCTGACTGATTTGGTTCTGGTTCTGACCAAAGAACCACTCACTAACCTGG
GCACAACACAACACAACTTAATGATGACAACTGCTCCTCCTACCAAAGCTGGTTCATCTC
ATCTCATCTCATCATCAAGTATCTACAAAACTTGAGCTTCTCCCATCCAGGTAGATCATC
ATCGATCATGGCACAGCACCAGCACAAGGGGTAGTGTTCACTCACTCACTAACTCACCTG
CTCATCAGAGAGAGCTCAGAGTTCCAGGTGCTGCTCGTAGTAGAGCTCGCTGAGGCAGGG
CGACAGGATCTCCTCCTCCAGCATCTTGAGCACCGCCCCCATCGACGGCCGCTGCCCCGG
GTCCGCGTCCGTGCACATGGCCGCGATGTCCAGGATCCCCTCCACCGCCTCCACCTCCGC
GTCGCCCGACCTCTCATCCAGGATCTCCTCCAGACGGTGCTCCCCGCTCAGCGTGTTCAG
CCAGCCGACGATGTTGGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTAAA
CTTGACCATAATCTCAGTCGGATTCGAGGACAATGTATTTAAGGAAAATTGCCCAGTAAC
GATTCAGGGCACATACTCGAACTCAAACTCAACCCTATGATAGTA

Homology of Contig U35_47154 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None