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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12197_PI390587928Hv_44K_v2AAATGCTGACCAACAGAGAAGCTGCTCTCTCTGTTCTGGGGAAAATTGGTAGTGCAGAAA567GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35407636902e-242025 - 208410060 / 60plus ABC14349 ABC43239
MLOCMLOC_77494.129572e-241437 - 149610060 / 60plus ABC14349
MLOCMLOC_77494.232492e-241437 - 149610060 / 60plus ABC14349 ABC43239
JLOC1JLOC1_51681.131058e-251437 - 149610060 / 60plus
Harvest21ABC479886403e-25568 - 62710060 / 60plus
Harvest35U35_471596403e-25568 - 62710060 / 60plus



Contig Sequence (640 bp)

>U35_47159 640 Hv_44K_v2
GGTCAAGTCAACTTCGTGGAAGTTCTGTTTGGATGTTTGCTTTTGGGGATTCCCTGAAGG
CCGAGGATATAAGAAGGTGGATGGGCAACTTTGAAGAAATTCGTTCAGTATCTAAGTGTG
CGGCTAGAATGGGCCAGCTGTTCAGCTCCTCCAGACAAACACTTGACATCCTACCACGGG
ATGTAGAAGAGATTCCAGATATCGAAGTCACAACTGATGGCACTAAATACATATTTTCTG
ATGGTATCGGGAAGATCTCTGAGAGATTTGCTAAAGAAATGGCTTGCCGAATCGGATTAG
ACTATACTAACCCTCCTTCAGCTTTTCAAATAAGGTATGGTGGCTACAAAGGAGTTGTTG
CTGTCGACCCTGATTCCTTTCGTAATCTTTCTCTGCGACCTAGTATGAAGAAATTCGAAT
CAAAGAGCAGAATGTTCAACATTACAAGTACCAGCAAATCCCAACCATGCTATATGAATC
GTGAAATCATCTCTCTCCTTTCAACTTTGGGGATAAGAGATGAGATATTTGAGTTGATGC
AACAACATGATATGCGTGAATTAGATGAAATGCTGACCAACAGAGAAGCTGCTCTCTCTG
TTCTGGGGAAAATTGGTAGTGCAGAAACGAAGACAGCATC



Homology of Contig U35_47159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g39160.111378e-102protein|RNA-dependent RNA polymerase, putative, expressed
Brachypodium v1_2Bradi5g12757.111415e-114
Arabidopsis v10AT4G11130.111331e-80| Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 | chr4:6780522-6784390 FORWARD LENGTH=1133