barSeed - Barley Seed Development Database

Probe CUST_12186_PI390587928

Source Contig U35_47167

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12186_PI390587928	Hv_44K_v2	AATATCCAGCCTAAGGAGCATATGACTCCTGTAAAGGGAAGCATTGTGGCCTCACATACA	488	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.043	1.354	2.506	1.915	0.504	0.449
Raw	227.026	469.942	740.607	923.859	82.133	81.068

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81975.1	3294	2e-24	1897 - 1956	100	60 / 60	minus	ABC16786
MLOC	MLOC_81974.1	3082	2e-24	1603 - 1662	100	60 / 60	minus	ABC16786
JLOC1	JLOC1_54525.1	2795	8e-25	1339 - 1398	100	60 / 60	plus
JLOC1	JLOC1_54524.1	2629	8e-25	1548 - 1607	100	60 / 60	minus
Harvest35	U35_47167	741	3e-25	489 - 548	100	60 / 60	minus

Contig Sequence (741 bp)

>U35_47167 741 Hv_44K_v2
TTTTTTTTTTTTTTTTTACGCAAATGTGCAATTGACATAACAGGATCAAGTGTTTTGGAC
TCAACAGAATATCAAGGTTTTCTGCAGTGTCCTGCATTTTTTACTACACTCGTAGCACTC
TCACTCGTTTAACAGCTAAAAGGAAGACAAGAGAAAACATAGGACAGCCTTTTGTACTAA
CTTGGGCTGTGGTCGCCTTCTGAATAACAAGGATGTAATCATAAAACAACCAGCAGCGTA
CGATTCCGAAACTCGGTTCCTCTGGGAGAACAAGGCACCTAGTCAGTGGCATCCCCGAGA
GAAATGGAGGACAGCTTCTGCGCCAAGAGGGTCAATGGAGTCGCCTCCCCATTAGATTGT
CCTTGAGAAATGGAGGACGGCTTATGGGTCAATGGAGTCGCCTCCCCAGTAACTTGTCCT
AGAGAGATGGAGGACAGCTTCTGGCTCAAGAGAGACACCGGAGTCATCTCCCCTACAGCC
TGCACATTTGTATGTGAGGCCACAATGCTTCCCTTTACAGGAGTCATATGCTCCTTAGGC
TGGATATTTTGATGCGACGCCAGAATGTTCTCCTTTAATGGACTCGGAAAACCACCAGGC
TGGACGTTCCCTTTTGCGGTATCCACGGCTGGAATGTTCTCCTTTGGCATATCCATGGCT
GCCAAAACTGGGCTGGTCTGGGGCGTGNCAGCTTCATTCTCAGACACATTCACTAGTTCT
ACTTCCATTTTGGCAATATCC

Homology of Contig U35_47167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None