barSeed - Barley Seed Development Database

Probe CUST_12180_PI390587928

Source Contig U35_35195

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12180_PI390587928	Hv_44K_v2	AAGCTGGTTTCAAACTTTAATCCATGAGCCCAGGCTGCAGCTCATTTTCTCGTGGTACTT	227	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1921.2	1221	2e-24	50 - 109	100	60 / 60	minus	ABC02273 ABC02275
MLOC	MLOC_1919.1	993	2e-24	898 - 957	100	60 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1919.2	1100	2e-24	909 - 968	100	60 / 60	plus	ABC02273 ABC02275
MLOC	MLOC_1921.1	2062	6e-24	1499 - 1557	100	59 / 59	plus	ABC02273 ABC02275
MLOC	MLOC_1919.3	1445	6e-24	875 - 933	100	59 / 59	plus	ABC02273 ABC02275
MLOC	MLOC_1919.4	1425	6e-24	855 - 913	100	59 / 59	plus	ABC02273 ABC02275
JLOC1	JLOC1_1168.2	1092	8e-25	47 - 106	100	60 / 60	minus
JLOC1	JLOC1_1168.1	1112	8e-25	47 - 106	100	60 / 60	minus
Harvest21	ABC02275	1608	3e-25	422 - 481	100	60 / 60	minus	ABC02275
Harvest21	ABC27941	666	1e-23	30 - 89	98	59 / 60	minus
Harvest35	U35_35195	310	3e-25	228 - 287	100	60 / 60	plus
Harvest35	U35_4136	1014	3e-25	34 - 93	100	60 / 60	minus
Harvest35	U35_4135	1236	1e-23	30 - 89	98	59 / 60	minus

Contig Sequence (310 bp)

>U35_35195 310 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCGAAAATGCTCGAGCGGCCGCTAGCTTTCCTGTGAAGG
TTATCAATATATTCAGAGATCGATATTCACCACTTAGACCTAAAACCTGCAAATATATTG
CTAGACGAAAACATGGTGCCAAAAATGACGGATTTTGGTTTGTCAAGATGCTTTGAAGAA
AAGCAAAGTCAAGCCAGCTATCACTTCAATAGCATCCGGGTCTATGAAAGCTGGTTTCAA
ACTTTAATCCATGAGCCCAGGCTGCAGCTCATTTTCTCGTGGTACTTGGGGGAGCCCTGC
TGCCGGCGGC

Homology of Contig U35_35195 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None