- Probe CUST_1217_PI390587928
- Source Contig U35_16677
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1217_PI390587928 | Hv_44K_v2 | AGAAGAAGCTGGAAAGGCCAATTGCTCAAGTTATATGGTGGAAATGGCTTGGGTAAAAGA | 630 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.089 | 1.374 | 1.358 | 0.881 | 0.323 | 0.288 |
| Raw | 23.227 | 44.677 | 39.848 | 39.209 | 3.177 | 3.620 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356522 | 2050 | 2e-24 | 1263 - 1322 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.3 | 1830 | 2e-24 | 1034 - 1093 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.1 | 1995 | 2e-24 | 1121 - 1180 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.5 | 1815 | 2e-24 | 1019 - 1078 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.7 | 1558 | 2e-24 | 544 - 603 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.8 | 1751 | 2e-24 | 537 - 596 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.4 | 2035 | 2e-24 | 1021 - 1080 | 100 | 60 / 60 | plus | ABC15782 |
| MLOC | MLOC_37018.2 | 1915 | 2e-24 | 1046 - 1105 | 100 | 60 / 60 | plus | ABC15782 |
| JLOC1 | JLOC1_23913.4 | 1965 | 8e-25 | 1041 - 1100 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23913.3 | 2297 | 8e-25 | 1028 - 1087 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23913.2 | 1955 | 8e-25 | 1031 - 1090 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23913.1 | 2313 | 8e-25 | 1044 - 1103 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15881 | 714 | 3e-25 | 483 - 542 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15781 | 830 | 3e-25 | 586 - 645 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16681 | 714 | 3e-25 | 483 - 542 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16678 | 1455 | 3e-25 | 586 - 645 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16677 | 693 | 3e-25 | 631 - 690 | 100 | 60 / 60 | plus |
Contig Sequence (693 bp)
>U35_16677 693 Hv_44K_v2 CTTCTCCTTCGGGTATCACTGGATCACAAGAAAAGGAAGGCCTGCGCCTAGAGAGCTTGC TCCTATTGTCGTTTCCAATCATGTATCATACATAGACCCCATATACTTCTTCTATGAATT GTTCCCAACCATTGTTTCATCGGATTCCCATGATGCCATACCATTTGTTGGGACAATCAT AAGAGCAATGCAGGTTATATACGTTGATAGATTCTCGCCAGCTTCAAGGAAGTCAGCTGT GAATGAAATAAAGAGAAAGGCAGCTGGCAATAGCTTTCCGCGTGTCCTGTTGTTCCCCGA AGGCACAACAACAAATGGGAGATTCCTGATTTCATTCCAACATGGAGCATTCATACCTGG CTACCCCGTTCAACCAGTTGTTGTTCGTTACCCCCATGTGCACTTTGACCAATCCTGGGG AAACATATCACTAGTAGCACTCATGTTCAAGATGTTCACCCAGTTTCATAACTTCATGGA GGTAGAGTACCTCCCTATTGTCTACCCCCCTGAGATCAAGCAAGAGAATGCCCTTCATTT TGCAGAGAATACCAGCTTTGCTATGGCACACGCCCTTAATGTTTTACCGACATCTTACTC ATATGCTGATTCAATGATTGCATCAAGAGCAGAAGAAGCTGGAAAGGCCAATTGCTCAAG TTATATGGTGGAAATGGCTTGGGTAAAAGAAGT
Homology of Contig U35_16677 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g49790.1 | 557 | 2e-153 | protein|acyltransferase, putative, expressed |
| Brachypodium v1_2 | Bradi1g34970.1 | 541 | 2e-154 | |
| Arabidopsis v10 | AT2G45670.1 | 539 | 9e-116 | calcineurin B subunit-related | chr2:18815070-18818382 REVERSE LENGTH=539 |