barSeed - Barley Seed Development Database

Probe CUST_12173_PI390587928

Source Contig U35_47178

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12173_PI390587928	Hv_44K_v2	TTTGGGAGAGTAAAAGAGTTGCTTGCGCAAGGGGTACAGCAAAGCCGATACAATGACAAA	148	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58589.1	3349	2e-24	794 - 853	100	60 / 60	minus	ABC05342
MLOC	MLOC_58589.2	3344	2e-24	794 - 853	100	60 / 60	minus	ABC05342
JLOC1	JLOC1_38083.2	2796	8e-25	1937 - 1996	100	60 / 60	plus
JLOC1	JLOC1_38083.1	2754	8e-25	1895 - 1954	100	60 / 60	plus
Harvest21	ABC48010	653	3e-25	149 - 208	100	60 / 60	plus
Harvest35	U35_47178	653	3e-25	149 - 208	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_47178 653 Hv_44K_v2
GCTTAATGANGTATTTACAGATGGGGTTCAACTTATGGACATATCATCACAGATTTTATA
CAACAGGGTCATGGCCCAACTGGGGTTATGTGCTTTCAGGGCTGGTTTTATTGCTGAAGC
TCATGGTTGCCTGTCTGAGCTATATTCATTTGGGAGAGTAAAAGAGTTGCTTGCGCAAGG
GGTACAGCAAAGCCGATACAATGACAAAACTCCTGAACAGGAAAGACTTGAGAGGAGAAG
GATGATGCCTTACCATATGCACATAAATCTTGAACTTTTGGAAGCCATACACTTGGTTTG
TGCTATGCTAATTGAGGTCCCCAACATGGCTGCCAGTTCTTTCGATAGACGGAGGCCTAT
GAGCAGAACATTCCGCAGGCTTCTTGAAATTAGCGAGAGACAGACTTTTGTTGGTCCTCC
GGAGACTGTGAGGGACAATGTATTGGCTGCCACAAGAGCCCTCAGTAATGGTGACTACAA
GAAGGCTTTCAGTGTCATCAGTTCACTCGATACCTGGAAGCTTTTGAGGAACAAGGAGCA
TATTCTTGAGATGCTGAAGCTTAAGATCAAGGAAGAGGCTCTCAGAACCTATCTGTTTTC
TTACTCGTCTTGCTACGAGTTCCTGAGCCTTGACCAGCTCACAACAATGTTTG

Homology of Contig U35_47178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g03230.2	937	3e-121	protein\|eukaryotic translation initiation factor 3 subunit C, putative, expressed
Brachypodium v1_2	Bradi4g30730.1	936	1e-122
Arabidopsis v10	AT3G56150.1	900	2e-100	\| Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1 \| eukaryotic translation initiation factor 3C \| chr3:20833790-20836820 REVERSE LENGTH=900