barSeed - Barley Seed Development Database

Probe CUST_12171_PI390587928

Source Contig U35_47181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12171_PI390587928	Hv_44K_v2	TGCATTCTTTGTAGATGAACTGTCTGATAGGGATTTGAGCCTGGCTGCAGCTAGTGAGTT	487	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52096.1	3436	2e-24	1210 - 1269	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.10	3275	2e-24	1140 - 1199	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.9	3387	2e-24	1140 - 1199	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.6	3493	2e-24	1242 - 1301	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.7	3606	2e-24	1242 - 1301	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.8	3198	2e-24	1097 - 1156	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.5	3231	2e-24	1100 - 1159	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.4	3311	2e-24	1137 - 1196	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.3	3533	2e-24	1362 - 1421	100	60 / 60	minus	ABC18874
MLOC	MLOC_52096.2	3617	2e-24	1363 - 1422	100	60 / 60	minus	ABC18874
JLOC1	JLOC1_33334.5	3551	8e-25	2127 - 2186	100	60 / 60	plus
JLOC1	JLOC1_33334.4	3617	8e-25	2193 - 2252	100	60 / 60	plus
JLOC1	JLOC1_33334.3	3263	8e-25	2064 - 2123	100	60 / 60	plus
JLOC1	JLOC1_33334.2	3384	8e-25	1960 - 2019	100	60 / 60	plus
JLOC1	JLOC1_33334.1	1605	8e-25	406 - 465	100	60 / 60	plus
Harvest21	ABC48012	601	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_47181	601	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_47181 601 Hv_44K_v2
GTATTAGCTGGAGCAAGGAAACTGATGCTGTTCAGAATTCTGCGTTGAGGGTCTTGATTT
GGTTCAATCGTTATTTTAAGCAGCTGAACATGCCTGTGGAGAAGTTATACCTTCCTAAGA
GCACTGATGGCTTCACCATATATCCGAATATTTTTTTACAAGAATTTGCAATGTGCTTAT
CTGTCTATGGCAAGACAAGTGGTGGTGATTCAAGAACATGCAACACAGTTGGATATTTTT
CTATGGATACATCATACGAGCAGCTTGAAAGCAGTACATTTTTAACAGACATTGATGGTC
AAGATTCTGGTGTTTTTCCATCCCATGGATCGATGGCTTGCATAAGCTACAGTATTCACC
TGTTTATGAAGGACAGCAGAAAGAGACATCTCCTAGAAGTCAATAATGAGTTTGAGTTTG
AGATAGGGGCTGGAGCTGTTAGGAATCAGCTTGAATCATGTGCAACTCAAATCTCAGTTA
ATCAAAGTGCATTCTTTGTAGATGAACTGTCTGATAGGGATTTGAGCCTGGCTGCAGCTA
GTGAGTTGTCACCGGACCTTTCCAAGATATCTAGAGACAGCTGCGTCTTGGAGTTCTCTG
T

Homology of Contig U35_47181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06970.1	927	2e-77	protein\|HEN1, putative, expressed
Brachypodium v1_2	Bradi1g56760.1	918	1e-108
Arabidopsis v10	None