barSeed - Barley Seed Development Database

Probe CUST_1216_PI390587928

Source Contig U35_16678

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1216_PI390587928	Hv_44K_v2	CAGTAGTTTTGGGGAAGATATTTCTGACTCTCTCTGCACGTTTATAAAGTAGTTCTTGGA	1395	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.490	1.853	1.263	0.597	0.155	0.153
Raw	687.103	1368.017	807.895	604.415	57.617	59.391

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37018.7	1558	6e-24	1354 - 1412	100	59 / 59	plus	ABC15782
MLOC	MLOC_37018.8	1751	6e-24	1692 - 1750	100	59 / 59	plus	ABC15782
MLOC	MLOC_37018.4	2035	6e-24	1831 - 1889	100	59 / 59	plus	ABC15782
MLOC	MLOC_37018.2	1915	6e-24	1856 - 1914	100	59 / 59	plus	ABC15782
JLOC1	JLOC1_23913.4	1965	3e-24	1851 - 1909	100	59 / 59	plus
JLOC1	JLOC1_23913.3	2297	3e-24	2183 - 2241	100	59 / 59	plus
JLOC1	JLOC1_23913.2	1955	3e-24	1841 - 1899	100	59 / 59	plus
JLOC1	JLOC1_23913.1	2313	3e-24	2199 - 2257	100	59 / 59	plus
Harvest35	U35_16678	1455	3e-25	1396 - 1455	100	60 / 60	plus

Contig Sequence (1455 bp)

>U35_16678 1455 Hv_44K_v2
GCCGGTCGCGGTGGTGCGGCTCGTGCTCTTCGGGCTGTCCATCGCGATCGGGTACGCCGC
CACGTGGGTGGCGCTGCGCGGCTGGACCGACTCGCGGGAGCGCCCGCGGGAGGGCGCCGG
CCCCATGCCGGCCTGGCGCCGCCGCCTCATGTGGGTCACCCGGCTCTCCGCGCGCTGCAT
CCTCTTCTCCTTCGGGTATCACTGGATCACAAGAAAAGGAAGGCCTGCGCCTAGAGAGCT
TGCTCCTATTGTCGTTTCCAATCATGTATCATACATAGACCCCATATACTTCTTCTATGA
ATTGTTCCCAACCATTGTTTCATCGGATTCCCATGATGCCATACCATTTGTTGGGACAAT
CATAAGAGCAATGCAGGTTATATACGTTGATAGATTCTCGCCAGCTTCAAGGAAGTCAGC
TGTGAATGAAATAAAGGTAGAGTACCTCCCTATTGTCTACCCCCCTGAGATCAAGCAAGA
GAATGCCCTTCATTTTGCAGAGAATACCAGCTTTGCTATGGCACACGCCCTTAATGTTTT
ACCGACATCTTACTCATATGCTGATTCAATGATTGCATCAAGAGCAGAAGAAGCTGGAAA
GGCCAATTGCTCAAGTTATATGGTGGAAATGGCTTGGGTAAAAGAAGTGTATGGTGTAAG
CACAGCAGAAGCAATGGAACTCTTGGAGCACTTTTTGGCTATGAATCCAGACAGTGATGG
ACGTGTTAAAGCACAAGATTTTTGGGCTCTTTTTGGCCTAGATTGCAGTCCTCTATGCAA
GAAGATATTTCACTACTTCGATTTTGAAAATAAGGAATCCATCACATTCCGACAGTTCTT
GGTCGGGTGTGCGCACCTCAAGAAGCAGCCATTATTTGAGGGAGTGTGCGAAACTGCCTT
CGAGAAATGCAAGGCCCCGGGGACCTCTGACATATCCCTCGCACAGCTAGCCAATGCCCT
GCGGTCGGGCATGGTTCCTCCAGCAGACGACGGGATGTTGAAACTGTTCGAGATGTTTGA
CATTGACGACGACGACAAAATAAGCAAGGACGACTTCGTGGGATGCCTTGCGAGGTTCCC
TTTCATGATCGCCCTCTTCGCCGGCCGGATCAACGGGGAAGTTTACATCGAGATAGTTTG
ATGGTTGATGGAGTTGTAACCCCTCAGTTTATTGGTTGCTGGAGTTGTTACCCCTCCTTT
ATTTAGGGGTGGTCAAAGTCCAGCTTATACCCCCGCCGCTTTGCGCATCTCAGACTGGCT
AACCAGTACAGCGCGGCAATTTTGTTTCATTTGTTCTTGGAGGGGATATGTGTAGATAGG
GATGTTGTGACACAATGGATTCTGCATATGGTTGTTGAACTGGATGTGCACATAGAAAAC
ACCTGTAACATCAAACAGTAGTTTTGGGGAAGATATTTCTGACTCTCTCTGCACGTTTAT
AAAGTAGTTCTTGGA

Homology of Contig U35_16678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49790.1	557	5e-109	protein\|acyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g34970.1	541	5e-127
Arabidopsis v10	AT2G45670.1	539	6e-60	calcineurin B subunit-related \| chr2:18815070-18818382 REVERSE LENGTH=539