- Probe CUST_12163_PI390587928
- Source Contig U35_47189
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12163_PI390587928 | Hv_44K_v2 | TCAATCTCCTCTGCCTGCTGACAAGGTGAAGCCGTTTGTTGAATACGATAATGAAGAAGA | 442 | GeneList: brown4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.773 | 1.090 | 1.206 | 0.668 | 0.222 | 0.193 |
| Raw | 339.192 | 310.774 | 320.087 | 284.911 | 32.167 | 31.894 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56421.1 | 839 | 2e-24 | 488 - 547 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_56421.4 | 1425 | 2e-24 | 483 - 542 | 100 | 60 / 60 | plus | ABC16460 |
| MLOC | MLOC_56421.2 | 1462 | 2e-24 | 492 - 551 | 100 | 60 / 60 | plus | ABC16460 |
| MLOC | MLOC_56421.3 | 1461 | 2e-24 | 491 - 550 | 100 | 60 / 60 | plus | ABC16460 |
| MLOC | MLOC_56421.5 | 1447 | 2e-24 | 455 - 514 | 100 | 60 / 60 | plus | ABC16460 |
| JLOC1 | JLOC1_36486.1 | 1361 | 8e-25 | 488 - 547 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48023 | 630 | 3e-25 | 443 - 502 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47189 | 630 | 3e-25 | 443 - 502 | 100 | 60 / 60 | plus |
Contig Sequence (630 bp)
>U35_47189 630 Hv_44K_v2 GGAAACCCAAATCGAACCGCCGGACCGGAGGAGCAGCCGACGACCAGCAGCAGAGCCAAC GGGAGGGAGCCATGGATCGGTACCAGAGGGTGGAGAAGCCGCGGGAGGAGGTGCCCATCA AGGAGAACGAGATCCGCATCACCACCCAGGGCAGGATGCGCAACTACATCACCTACGCCA CCACCCTCTTCCAGGATAAGGGTTGCGATGAAGTTGTATTCAAGGCCATGGGAAGGGCCA TAAACAAAACTGTGATGATTGCAGAATTGATCAAGAGGAGAATTGTGGGTCTCCATCAAA ACACTGCCACTGAATCCACTGATATTACTGACACATGGGAGCCTCTGGAGGAAGGCCTAC TTCCACTTGAGACAACAAGGCATGTGTCTATGATTACTATAACTCTTTCAAAGAAGGAGC TGGACACTTCATCTGTTGGATATCAATCTCCTCTGCCTGCTGACAAGGTGAAGCCGTTTG TTGAATACGATAATGAAGAAGATGCGCACTCACCTCCTGGACGAGGAAGAGGGCGTGGTC GAGGCCGTGGAAGGGGAAGGGGTAGAGGTGCACGTGGAAATGGATACATGGAGTATGCTG ATGGTGGATGGGAGAATGAGCATGCTCCTG
Homology of Contig U35_47189 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g37006.2 | 270 | 4e-89 | protein|protein of unknown function domain containing protein, expressed |
| Brachypodium v1_2 | Bradi4g36710.1 | 320 | 3e-95 | |
| Arabidopsis v10 | AT1G76010.1 | 350 | 8e-61 | Alba DNA/RNA-binding protein | chr1:28528505-28530488 REVERSE LENGTH=350 |