barSeed - Barley Seed Development Database

Probe CUST_12159_PI390587928

Source Contig U35_47194

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12159_PI390587928	Hv_44K_v2	TACCAGCTGTTCAAGGCCAATGCGGACAACCGCGTCCTGGTGGAGAACCGGTTCGCCTTC	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3499.1	1973	2e-24	186 - 245	100	60 / 60	plus	None
JLOC1	JLOC1_2100.1	1403	8e-25	48 - 107	100	60 / 60	plus
Harvest21	ABC48025	629	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_47194	629	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_47194 629 Hv_44K_v2
GGCTCCGCCCCCGACACTGGCAGCCTCCACGCCGCCGTCCTAATTAGCAGCCACCCGCGC
GACCTACCCAGCCGCCCCCGCGCTGCCCCGGGATCGCGCGGATCAGATGCTATCCCTGGG
CGCCCTCCGCAAGCTCTGCGCCGCCTTCGACGCCGTCGCGCTCACCATCATCGCCGCCGG
CCTCTCCCACCCCCGCTGCCGCCCCTTCTCCGCGCGCGCGGGCGCGCACCCCCCTCCGAC
AGACTTCCCCACCATCGCCTCTTGCCGAGCCGCGGTCACCGCCTCCAGGAGCCGCCGCCA
GCCCTCTTCGGCCCCCGCCGAGGCGCAGCCGGAAAGGCCCGCCGCGGGCGCCGAGGCGTC
GGTGCTGGTCAGGATCAAGAGCGAGCGGGACCCGGTGCGGCTGTACCAGCTGTTCAAGGC
CAATGCGGACAACCGCGTCCTGGTGGAGAACCGGTTCGCCTTCGAGGACGCGGTGGCGCG
ACTGGCAGGTGCTCGACGGAATGACCTCGTGGAGGAGATCCTCGAGCAGCACAAGGCGCT
GCCCCAGGGAAGGCGGGAGGGGTTCGTCATCAGGATCATTGGCCTGTACGGAAGGGCCCG
GATGCCCGAGCACGCGCTCCGGACGTTCA

Homology of Contig U35_47194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39050.1	444	3e-69	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi3g39320.1	449	3e-75
Arabidopsis v10	None