barSeed - Barley Seed Development Database

Probe CUST_12156_PI390587928

Source Contig U35_47197

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12156_PI390587928	Hv_44K_v2	TCGTTCTCCAGTGTTAGCAATTTTGGTCAATACATGTATTTTTTCGCTGTGCCCAAAAAA	11	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.349	2.176	1.424	0.799	0.273	0.396
Raw	36.641	94.003	53.718	48.567	4.584	8.448

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41704.5	1498	6e-21	1334 - 1386	100	53 / 53	plus
JLOC1	JLOC1_41704.4	1551	6e-21	1387 - 1439	100	53 / 53	plus
JLOC1	JLOC1_41704.3	1636	6e-21	1472 - 1524	100	53 / 53	plus
JLOC1	JLOC1_41704.2	1618	6e-21	1454 - 1506	100	53 / 53	plus
JLOC1	JLOC1_41704.1	1754	6e-21	1590 - 1642	100	53 / 53	plus
Harvest35	U35_47197	780	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (780 bp)

>U35_47197 780 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGCACAGCGAAAAAATACATGTATTGACCAAAATTGCTAACA
CTGGAGAACGACAGCTATTTCTATCTTATAATAGCATGGTCAACGGAGAACAACAACTTA
CTAAAATGTCCTAAAATAGGATCATATCATTCTAGGAAGAACAAGAGGTAAAAATAGAGC
TTGCTCTTAAGAATGCCACTTGCATACAGATTGACCGCCTTTCCTCAATAAGGTTAACCT
CAGGTGAAGTTGGTGCATGGAACTCAACAAATGCAGTCCAAATGGCAATTCTTCAACTTA
GACAGAGTCCACAGGTGTTGTTTCTGGCTTTTCTCCGTCTATTATAACCTTGGACTTCAG
TGAGGGAGAACTCTGCCTAGACGTTGATGCAATTCTCTTACCACCGGTGGTTGACTCTTT
TAGCCCTAGGTAAGTGTAGACTGACATGCCTCCTAGTGCAATGACAGCTCCATAAAGACT
GGTGAGTCCAGGATCAGATTTAAATACCAGAAACCCAGAGAGCATTATGACAATAGTCTT
GAATTGGCCAAGCACAACATGAGACAGAGCTGAGGTTGCACCAAGTGCCAAAGCACCGGA
CCACTGAAGAAGAAAACCAAGCAAAGCAGATATGATAATTGCACAGCTGTTCTTGAAATT
CCAGTTGAAAGACACAATCCCGGAGGATCCATNCAAGGCATCNAGGACAGGAAGAAAAAT
ATCGTAATTGGGGTTGTCTTCCACATCAACGCAAGAGCAGTCCAGTTTCCACTCTGTTGC

Homology of Contig U35_47197 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g43250.1	385	1e-52
Arabidopsis v10	None