barSeed - Barley Seed Development Database

Probe CUST_12150_PI390587928

Source Contig U35_6104

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12150_PI390587928	Hv_44K_v2	CCCCTAGATCTGTGTAAACTGATGATGTTGGCTTTTTACTACTGCTAGATTATTTCAAAA	714	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71040.1	583	7e-23	500 - 556	100	57 / 57	plus	ABC19086 ABC29898
JLOC1	JLOC1_47180.1	657	4e-23	503 - 559	100	57 / 57	plus
Harvest21	ABC29898	359	1e-23	14 - 73	98	59 / 60	minus	ABC29898
Harvest35	U35_6104	787	3e-25	715 - 774	100	60 / 60	plus

Contig Sequence (787 bp)

>U35_6104 787 Hv_44K_v2
TTCACCATCGAGCAGAATCCCATGTCCACCAAGCTCTGCGTCAAGAATCCGAGGAATGAT
TACTCAAGGGAATGGGGATTGAGAAGTTGTCTTCCGCAACTCGATAACCAGGGTCCGGCG
CGACCGCAAGTACGCGATCCAGGCGCGGAACGCATACGCGACCGGGGTGCACATGTCGCA
GAACGTGTACGGGAGGTCGACGCACAAGACGGAGACCCTGATCAGGTACTACCACTACCA
CAACTCCATCAACGTGCTGGGTGAGCCGTGCCAGGAGTTCGTGCCGAGGCCTGGTCGCGG
CCGCAAGGTCATGTTCGAGGGCGTCCCCTACGTGTACGACGACACCATGAAGCGCCTCGC
CGGCGAGATCAGGCGATTCGAGAACGAAACCATCGGATCGTTGTCTCATACATAACGAAC
AGCGGCTGGGAGGTGACTGCTGGCTGCTGGGTACATATACGCTGATGTTTCTTTAGGATG
GATGCCTGGTTCTTGTGGAACTCTCAGTCTTAGCTGATAAGTGCAGGGGAGAGCCTGTTT
TATTTAGAGGCAGGGCAGGTCGGCTGGTGTAAAGTTTTGGTTTTTCTTTGGGCTGCCCTT
CTTTCTCTTCACCTTTTCATGTAAAGTTGGTTCTCTCAGATCTGCTTTTTTTACTGCGTC
TTCTTTCTCTTCACCTTTTCATGCTTGTCCCCCACATCCGTTTGCAGATAGATACCCCTA
GATCTGTGTAAACTGATGATGTTGGCTTTTTACTACTGCTAGATTATTTCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_6104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22330.1	522	1e-56	protein\|expressed protein
Brachypodium v1_2	Bradi1g42556.1	503	1e-51
Arabidopsis v10	None