barSeed - Barley Seed Development Database

Probe CUST_12149_PI390587928

Source Contig U35_6105

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12149_PI390587928	Hv_44K_v2	CTGAGCCACTATGTGTATAAGAGGATGAAGGAGAACTTCCCTGAATTTGTGGAGAAATTG	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76230.1	1010	2e-24	664 - 723	100	60 / 60	minus	ABC24856
JLOC1	JLOC1_50833.1	1326	8e-25	290 - 349	100	60 / 60	plus
Harvest35	U35_6105	621	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_6105 621 Hv_44K_v2
CCCTGAAGCATCCTCATATCACGTCTCTCACCTCAGTCACAGAGTAGTCAGCCACGCCAA
CACCACAGCCCAAACCTCGCGAACCAAACCCTGACGATGGCGCCCGTGGCGGGCAGCAGC
TTCTTCCAGGGTGCGCGGCTCCCGGAGCAGCGGCTCGTCGAGGGCGTCGCCTTCCCCGCG
GTGCTCGTCCCGACCGGCGGGCCCCCGGGACCGGGAGAGGGGAGCCTCGACGAGTTCCTG
TCGGCCGTGCGGTCGGAGCGGGCGTCCCGGGTGGAGCCGCTGCTGCGGGAGGCAGGGGCG
GTGCTGCTGCGCGGGTTCCCCGCGCGGACGGCGGCGGACTTCGACGCCGCCGTGGAGGCG
TTCGGGTACGAGGAGCTGCCCTACGTCGGCGGCGCGGCGCCCCGGACCAACGTCGTCGGC
CGGGTGTTCACCGCCAACGAGTCACCGCCCGACCAGAAGATCCCCTTCCACCACGAAATG
GCGCAGATTCCGACTTTTCCGGCGAAGCTGTTCTTCTTCTGTGAGGTGGAGCCAAAAAGT
GGTGGAGAGACACCAATAGTGCTGAGCCACTATGTGTATAAGAGGATGAAGGAGAACTTC
CCTGAATTTGTGGAGAAATTG

Homology of Contig U35_6105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g09430.1	333	1e-91	protein\|expressed protein
Brachypodium v1_2	Bradi2g05640.1	333	3e-96
Arabidopsis v10	AT3G21360.1	330	4e-63	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:7522865-7524036 FORWARD LENGTH=330