barSeed - Barley Seed Development Database

Probe CUST_12148_PI390587928

Source Contig U35_6106

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12148_PI390587928	Hv_44K_v2	CAGGTTTGTGTAAGAAAGCTAACCATTGTGTCGCTACAACCGAATCACATCACCACTAAA	1157	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.240	2.132	1.043	0.848	0.380	0.339
Raw	39.295	56.900	26.070	36.819	3.933	3.586

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39507.1	1635	7e-23	692 - 748	100	57 / 57	plus	ABC13717
JLOC1	JLOC1_25763.1	2931	4e-23	716 - 772	100	57 / 57	plus
Harvest21	ABC13717	1230	3e-25	1158 - 1217	100	60 / 60	plus	ABC13717
Harvest35	U35_6106	1230	3e-25	1158 - 1217	100	60 / 60	plus

Contig Sequence (1230 bp)

>U35_6106 1230 Hv_44K_v2
TGCCGCTCCTAGCTCGTCGACAAGCACACCCACAAAGCCACTGATAACAAGCACATAGCA
GCCCGCGCTCTCTTATAGTAGAACGTTCCGAACACCACACCAGCCCATGCAAGACTTCCA
GTCCATCCCGGGCCTCGCCGGGCGTCTGTTCGGCGGCGCGGCGGCGGCGGACATCCGGCG
CGCGCAGGGCCCGGCGTCTCGGTGCGGCGTGTTCTCCCAGGCGGCGTCTGCGCAGCCGGA
GGCGGCCGTCAAGTGCCCGCGGTGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAA
CTACAACTTGTCGCAGCCGCGCCACTTCTGCAAGAGCTGCCGCCGGTACTGGACAAAGGG
CGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGGCCAAGCGCAGCTCGTC
GGCGGCGTCCGCCCCGTCGACGCCCGCTGCCACGGACGCCAAGAGCCAGCGCCGCGCCTC
GGCGTCGTCCTCCTCCCGCTCCAACAGCGGCAGCGCGAGCCCCACGGCCACCGGGGAGGA
GACGACGACGGCCGACCCCCCTCCGCCCACGCCGTCGTCCAACTCAAACTCAAACACCGT
CGCCTTCGGCAACCGCAGCACCAACTACCCCTTCGCGGCAGACGTGCCGCCTCCGGCGCC
GATATTCGCAGACCAGGCCGCCGCGCTCGCGTCCCTCTTCGCGCCGCCTCCTCCCCCGCC
TCTCCCGGTGTTCAGCTTCTCGGCGGAGCCGAAGATGGAGGAGGCAATCGGCTCACTGCT
GCTCCCGGGGCAGGCGCCGGCGCAAGAGCCAGAGGAACCCGCCTGCGCCTCCACCGTCGC
CGACATGGCGCCGTTCATGTCCCTGGACGCGGGGATCTTCGAGCTCGGCGACGCGTCGCC
GGCCGATTATTGGAATGGCGGGAGCTGCTGGACGGACGTCCAGGACCCGTCCGTCTACCT
ACCCTAGTTTGGTTTAGTTATTACTACTCCGTATTACTCATGGCGATCTCTTTAATTAAG
CTGTGATTAAATCAATGCTTCTTAACGACGACCAACAGCTAGCTGGTAAGTACTATAGTA
CATGTAATGCTACGTACGTACTGCCTGCACTTGTACCTCTTAATTTGTTTCCGTCCCATT
TCTGTGGCTGCACATCACAGGTTTGTGTAAGAAAGCTAACCATTGTGTCGCTACAACCGA
ATCACATCACCACTAAAAAAAAAAAAAAAA

Homology of Contig U35_6106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None