- Probe CUST_1213_PI390587928
- Source Contig U35_16679
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1213_PI390587928 | Hv_44K_v2 | TAAGGATTGGATAAAATGGGATACTAGAGCATGGAGGCAAGCATTGAGGATTGCAACCGG | 663 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.399 | 1.289 | 1.203 | 0.620 | 0.218 | 0.599 |
| Raw | 45.909 | 64.065 | 56.306 | 41.697 | 4.667 | 14.920 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357570 | 1739 | 2e-24 | 1041 - 1100 | 100 | 60 / 60 | plus | ABC09671 ABC09672 |
| MLOC | AK359911 | 1174 | 2e-24 | 381 - 440 | 100 | 60 / 60 | plus | ABC09671 ABC09672 |
| MLOC | MLOC_82077.1 | 467 | 2e-24 | 368 - 427 | 100 | 60 / 60 | plus | ABC09671 ABC09672 |
| Harvest21 | ABC09672 | 1409 | 3e-25 | 592 - 651 | 100 | 60 / 60 | plus | ABC09672 |
| Harvest21 | ABC09671 | 1391 | 3e-25 | 648 - 707 | 100 | 60 / 60 | plus | ABC09671 |
| Harvest21 | ABC09670 | 1201 | 3e-25 | 1132 - 1191 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16680 | 2291 | 3e-25 | 1081 - 1140 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16679 | 733 | 3e-25 | 664 - 723 | 100 | 60 / 60 | plus |
Contig Sequence (733 bp)
>U35_16679 733 Hv_44K_v2 GATTCCTCATGCGACAGATATGGAGGGCACCATCCAAGGGGGGCAAGATCAGATTTCTCA TGCGACAGACATGGAGGACACCTTCCAAGCGGGCCAAGATTATGATCTTCTGCTGAACAC AGAGCCGGCACAAGAAGAAAGCGAGCAGCGTTTCGGGCCGCACTTCCTTATCAGCGACGA AGACTATGACAAGTATTCTCAACTTTTGCTTGCCAATATTCAGACGGAGGACGATTATCC TACTGACCTGCCACTTCATATGACATGGGAGGAACGGCACAAGATAGAAGCGCGCTTTGC ACGCTATCGCATCGCTCATTGCAAGGTTGTAAATCCAGAGCGCGCACGTGAACTCAAGGA ACCAGAAGAATACACTGATGAGGAACTTCTCCGCGAGTCATACTTTAAGGCATTAGAGAA TGATGAAAATTTTGAGTGGTACACCCATCGTGATGACATCCAGGACATTGAATTGAATGA CTACCAACGGATTGTTCCTCGCAATTTTCTGCCTGATACGAGTGGAGGCCTGTACGGCTA TCACGCTGAGTACCGCTCGCGTTATCATACATATAAAATTGATGATGCTTATGTCAAGTA CTATGCAGAAATTTCAAAGAAAATCAAGTGGATTGCAGATTATTTGCATCTGGATCACAG GACTAAGGATTGGATAAAATGGGATACTAGAGCATGGAGGCAAGCATTGAGGATTGCAAC CGGCATTCCTCAT
Homology of Contig U35_16679 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g13380.1 | 409 | 2e-55 | |
| Arabidopsis v10 | None |