barSeed - Barley Seed Development Database

Probe CUST_12136_PI390587928

Source Contig U35_6120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12136_PI390587928	Hv_44K_v2	AGCAAAATTGAAGCAGAACTTGAAGCCGAGCTTGCAAGGCTGGAGTTAAATATCACTTCA	1416	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20816.4	1478	2e-24	1282 - 1341	100	60 / 60	plus	None
MLOC	MLOC_20816.1	1865	2e-24	1484 - 1543	100	60 / 60	plus	ABC12333
MLOC	MLOC_20816.2	2353	2e-24	1370 - 1429	100	60 / 60	plus	ABC12333
MLOC	MLOC_20816.3	2470	2e-24	1487 - 1546	100	60 / 60	plus	ABC12333
JLOC1	JLOC1_14430.2	2577	8e-25	1482 - 1541	100	60 / 60	plus
JLOC1	JLOC1_14430.1	2388	8e-25	1293 - 1352	100	60 / 60	plus
Harvest21	ABC12586	1476	3e-25	1417 - 1476	100	60 / 60	plus
Harvest35	U35_6120	1476	3e-25	1417 - 1476	100	60 / 60	plus

Contig Sequence (1476 bp)

>U35_6120 1476 Hv_44K_v2
GCTCCTGTCCGTGGTGCTCTGCTCTCTCTCCTCCCTCCCCGCTACCTCGCGCCTGACCAG
CCACCTCGCCTCCGCATTGCCGCTCCGCCGGGGGCGCCGGCAGCCGCTGGCGCCTTATCC
CTCCCTCCCCCCTTTCTCGGTGAGAAAAAGCTCCCGCCCTCGGCGATCCTTGGCCGTCTC
TTCCGGAGATCTTTTGCCCCGCCGCTTCTGGGTTTTCTTTGGAGGAGGGGAGGTCGGGTC
GTGCGGCGAATCCCAGGTTGGTGACCCTGTTCAGCTCTGGAGATGAGGAGGTGCCTGTGC
TTTTGCCTTTTGCTGAGGAACTAGTGCCAGGTTGCAGGACTTCCAATGGATAAGCAAAAG
AACCACAAGAATGCGGAAATGGGGAACGATGTGTTCCGCAGAATGATCCTTAATCAGGTT
GGCAGGGACATCGGTTTGGAGGAGGAGAACGTGCCTTGCAATACTCCGAGGAACTCTGTT
CATTCGCGGTTTGGCGGTTCATCTGCCAGATTTGCTGCTTCCACCAATGGAAGCACCGGT
GCTGAGTCGGTCAGCCCAGGCGAGTATGTCAGAGATCCTGGATCCATATTGAGCTTGCAG
CCTTGGATTTTTAAGAGAAGCAGCACAAAGGACAACGAGGAAATGGCGGTTCCAAGTGGT
GGCAGGGCAGTTGGTAGAGGCAAGAATCTGGTGGATGGCTTTCGAGATGGTTCGACTACT
GAGGTTTCCACAAGAAGCCCTGGTCTTGGTTCTGGGCCTGGAGGAGGTCGAGGTGCTCTT
AGGAGCAGACGACCCCAGAGGCATTTTTTTAAGCCACTTGTCGCAACAGAGAACTCGTAC
ATCCCACAACTTTACAACGAGAACTTCGAGTTTGAAGAATGCACATTTGCTCCAGTTCCA
TCCCCAGCTTCTGCTAGGCCATTCATTGTAACAGATGGGAGAAGAATCATTAGTAAATCG
CGCTATGAACCAGTGCCGGTACCCTTTAATATTGGGTTCGACAAGGAGGGTTGTCGAAAT
GGCTCAGAAGTGCCAGAAAGTGTGGTTGGAATTGCTCCTCTACCTGAGCTGAATAAATCC
AAAAGGGACAGCAGGGTACCGCAAGGTACAAGGTTTAGTTTGCCTGGCTCCCAAAGCGAA
AGATATAGTAAACCATCAAAATCAGCAGGTTTACTGGAACGAATGCTCATGTTCTCCAGT
GGGGTTGGCATTGGTATTATATCTTCCTCTCTATCAAGCAAAAAAGATCTTGATTCGTTG
AAGGGCACACTGAAGCGAATGGAGAACTTGGTTCAGGATTTGCAAGATGAGCTGGAGATG
AAAGAGGGGTTAACCGTGGAGGAATTGCCTAATGAAACGTCTGGTGAACAAGATGATAGC
AATATCAAAGCTCACACCCCTGATTCAATGTCAATGAGCAAAATTGAAGCAGAACTTGAA
GCCGAGCTTGCAAGGCTGGAGTTAAATATCACTTCA

Homology of Contig U35_6120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38730.2	633	7e-127	protein\|expressed protein
Brachypodium v1_2	Bradi4g03800.1	633	1e-147
Arabidopsis v10	None