barSeed - Barley Seed Development Database

Probe CUST_12135_PI390587928

Source Contig U35_6121

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12135_PI390587928	Hv_44K_v2	TACTGTACTGTCTTGGAACGATATATTCGTCGATTATGCGAATGTTGTACTTCCACCTAG	477	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7019.3	1674	7e-23	1584 - 1643	98	59 / 60	plus	ABC17944
MLOC	MLOC_7019.1	2187	7e-23	76 - 135	98	59 / 60	minus	ABC17944
MLOC	MLOC_7019.2	2515	7e-23	76 - 135	98	59 / 60	minus	ABC17944
JLOC1	JLOC1_4621.2	1363	4e-23	1155 - 1214	98	59 / 60	plus
JLOC1	JLOC1_4621.1	1691	4e-23	1483 - 1542	98	59 / 60	plus
Harvest21	ABC17944	612	3e-25	478 - 537	100	60 / 60	plus	ABC17944
Harvest35	U35_6121	612	3e-25	478 - 537	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_6121 612 Hv_44K_v2
AGCGTGGTGGTAGATTCCGCCGAGGAGGCTATGGTGGTCGTGACGATTATTACGGCAACA
GCTATCGCAGGTCTCCGCCTCCCATGTACCGAGACTACAGGGACACCCGGGACTACCCTC
CCTACAGGGACACCCGCGACTACTCCCCACCCCATAGGGATGCCCGAGACTACTATGATG
GCAGGGGTGGCCGGGGCTACTCCCCCCACAGGTCTCCCCCTCCTTATGGTGGCAGAGCAA
GGAGGGAGCGGTCTAGGTCGTTGCCGTATTCCCCATACCGGATGCCTGAAAGGGGCTATG
GCCGCCGTGCCGGTGGTGGTGGCTATGACAGGTAAAGGGTGGTTGTTTCTTTGCGTCAGC
AGAGGCCCTGTGTCAAGTTGGATAACATGCTGCGCGTGACGGGCCTCCCCTTATGTTAGA
TTATGTGTAAGCTGTACTGTCATGGCCTCCCCTTTATGCTAGATTATGTATAAGCTGTAC
TGTACTGTCTTGGAACGATATATTCGTCGATTATGCGAATGTTGTACTTCCACCTAGTTT
TTAACAAAAAAAAAAAAAATGTTCGTTCTATATGGATTCATCCTTTTAACTATTCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_6121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None