barSeed - Barley Seed Development Database

Probe CUST_12124_PI390587928

Source Contig U35_6132

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12124_PI390587928	Hv_44K_v2	TTTCTTGCTGACTTTGAGGTTTACATGTCTGCGCTTTCTGTTGCAACTGCCCCTTTTTGG	1073	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.087	1.319	1.138	1.075	0.482	0.437
Raw	549.776	1015.608	776.410	1133.928	184.973	180.188

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7758.1	1714	8e-25	1297 - 1356	100	60 / 60	plus
Harvest35	U35_6132	1178	3e-25	1074 - 1133	100	60 / 60	plus

Contig Sequence (1178 bp)

>U35_6132 1178 Hv_44K_v2
ACTAGTGGATCCAAAGACAAAATGCTGGCTGTTCAAAAGAAAGAGAAGAGAAACTTGCAG
AGATACTTAAAAACCGGCTGCACCTTTATGTTCAAGGAAATAAAGAGGAGTTCGTTCGGC
TTGCTGAGGCCGAGGTGTCCAGACTTAGTGATGCAGCATATGGGCTTGTTATGCTGAATA
CTATTGGTTATGTATATTCAAGACAAGCTGCAAAAGAACTTGGAAAGAAGGCAATATATT
TGGGGGTTCCGTTTGTAGCAGAATGGTTCAGAGACAAAGGCCATTTTATCAAATCCCAAG
TAACAGCTGCAGCAGGTGCAATAGCTCTTATGCAGCTGCAAGAAGACTTGAAGAAGCAGA
TGGGTGCTGAGGGCCAGACCACAGAGGAAGAACTTGAAGTTTACATGCAGAACCACAAAA
AAGTTATGGTTGATTCCTTGTGGAAGCTTAATGTTGCTGACATAGAAGCAACCATATCAC
ATGTCTGCCAGATGGTGCTTCAGGACCCCTTGGCCAAGAAAGAAGACCTGCGTCTTCGTG
CCAAAGGACTGAAAACTTTAGGGAAAATTTTCCAGGGGGTTAAGCTCAACACTAGCGAGG
GGGAAGCGTCGCAAATGAAGAATATAGATAACATGGATGACAATGCCGGCAGCTCCCCTG
ATACGTCGCCAAAACGGGAGCCATCATTCAATCCCATTCCTAACCCTCCTCTTACCCAGA
GTCCATATGTGGAGGCCCCCCAGTTTGGTGGAACCTATTGTTCGTTCAACTTCCCAATGC
CGACGGCTCCACCAGGTGCGCAGAGGGATCCGGTGCCTTGACGGCCACACCAGATTTCAT
GTACCATTATTTCATGTAATGTCGCCTGTGCATGGTGCATCATTTGTACCCGTGGTAGTA
GAGGAGACGGATGAGTCGGAATCAGTCAGATATAACCTCACTATTTCTCCGGTTGTGTAG
CAGCCGCGTATTGCCTGTCTATTGTGTACAGTTGTGTTAAGGCTGCTGTTACAGCAGCAG
CAGTAGGTCACAATTGTTGTACATGATTTGGTGTTGTCATTCCTGAGCTGAGGTTTCTTG
CTGACTTTGAGGTTTACATGTCTGCGCTTTCTGTTGCAACTGCCCCTTTTTGGCCGATGA
AGCGCGTCTAATGATGAACGGTCGTGCTGTGCAAAGAA

Homology of Contig U35_6132 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41110.1	395	1e-157	protein\|chaperone protein dnaJ 10, putative, expressed
Brachypodium v1_2	Bradi3g40307.1	396	7e-174
Arabidopsis v10	AT1G21080.3	400	8e-102	DNAJ heat shock N-terminal domain-containing protein \| chr1:7378822-7382275 REVERSE LENGTH=400