barSeed - Barley Seed Development Database

Probe CUST_12119_PI390587928

Source Contig U35_6137

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12119_PI390587928	Hv_44K_v2	GCGGTGTAATAGATGAAGAGATGTACATACTGTACAATTCAGGGTAAATATAAGTTCATC	861	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.549	0.743	0.894	1.756	1.242	1.665
Raw	110.587	231.414	251.382	737.380	191.931	277.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16441.1	2571	2e-24	1426 - 1485	100	60 / 60	minus	ABC13947
MLOC	MLOC_16441.3	1269	2e-24	872 - 931	100	60 / 60	minus	ABC13947
MLOC	MLOC_16441.2	2734	2e-24	1609 - 1668	100	60 / 60	minus	ABC13947
JLOC1	JLOC1_11316.1	1227	8e-25	1088 - 1147	100	60 / 60	plus
Harvest21	ABC13947	921	3e-25	862 - 921	100	60 / 60	plus	ABC13947
Harvest35	U35_6137	921	3e-25	862 - 921	100	60 / 60	plus

Contig Sequence (921 bp)

>U35_6137 921 Hv_44K_v2
GATTTTTCCTGGATAGCTTTGAAGAGCGTCTAGCTGCACAAAGGAAAGAGAGAGAGATGG
CAACCGTGGAACCTGGATTTAAAAAACAATTATCTAAGGAGGAAAAGTTTGAAAAGAAGA
AGCAGAGACTTGCAGCTATCGGAGAGGATCTTTTGGCAATTGCTGCTGATCAACCATTTC
GGTTTCCTGCCACCTTTACATTTGTGGTTAGAGCATTCTCAGTTCTGGATGGTATTGGGA
AAGGTTTAGATCCTAGATTTGATATCACAGAGATTGCTAAGCCTTATGCCATGGAGTTGC
TCAGATTTAATGAAGCTGGTGTTGAAGTACTTGTTAAGGATGCAAGGAAGCGATGGGACA
GGCAGTCTCGTGCATTCTACAATGTGTTTCGTCAACCTGACAGAGTTGAAAAACTTGCAC
AAATCATTGAGCGTTTGGAGCAAGGTGATCTCAAGCTTCGTGTCAGAGCATTGGAATCGG
AAAGATCGTTTCAAAGAGTTGCTGCTGTACAGAAAACAATTGGATATGGAGTGGCCGCGG
GTAGTTTGGTAAACCTCGCTACCATTCTGCACATCAATTCAATCCGGATGCCAGCAACCA
TAGCATACTCTCTTTGCGCGTTCTTTGGGCTACAAATACTGCTTGGCGTTCTCAAGGTGA
AGAAGCTGGACCAACAAGAGAGATTGATAACCGGCACTGCCTGAGTTCACCATCTACCAG
TGAAAGCTGACCCAAAAGATTTCAGTGTAATGTATTGCGATTATCATCCGCCTTTTCTTT
TGTTTTCTTTTTGCCTGTGTGCAGTTTTACCTGAGGTGGTGTAGCTAGCCATCGGCGTAC
GAGTATAAAATCTTTGTACATGCGGTGTAATAGATGAAGAGATGTACATACTGTACAATT
CAGGGTAAATATAAGTTCATC

Homology of Contig U35_6137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36570.1	764	2e-143	protein\|ABC1 family domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g46737.1	756	2e-145
Arabidopsis v10	AT5G64940.1	761	3e-127	\| Symbols: ATATH13, ATH13, ATOSA1, OSA1 \| ABC2 homolog 13 \| chr5:25949116-25953326 FORWARD LENGTH=761