barSeed - Barley Seed Development Database

Probe CUST_12115_PI390587928

Source Contig U35_6141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12115_PI390587928	Hv_44K_v2	CGACATGTCCCTTTTTTCTGTATTTTTCATGGCTACTACATCGATGCATTTGTTTTGTAG	1229	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	16.113	4.503	0.948	0.709	0.449	0.759
Raw	241.549	110.004	19.958	25.913	2.858	9.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16097.1	2696	2e-24	360 - 419	100	60 / 60	minus	None
MLOC	MLOC_16097.2	2547	2e-24	360 - 419	100	60 / 60	minus	None
MLOC	AK252063.1	1710	7e-23	1607 - 1666	98	59 / 60	plus	None
JLOC1	JLOC1_11067.1	2433	8e-25	1875 - 1934	100	60 / 60	plus
Harvest35	U35_6141	1345	3e-25	1230 - 1289	100	60 / 60	plus

Contig Sequence (1345 bp)

>U35_6141 1345 Hv_44K_v2
GCCGTCTCCACCAACCCCGCAACAGAGCAGAGCCACAATGGACATGGACATGGCGTCGCT
GCTGCCGTTCGTGCTGGCGCTGGTGGCGATCCCGATCTCGCTGGCGCTGCTGGACCGGCT
GCGGCTGGGCCGCCTGCCGCCGGGCCCGCGCCCGTGGCCGGTGGTGGGCAACCTGCGGCA
GATCAAGCCCGTGCGGTGCCGCTGCTTCCAGGAGTGGGCGGAGCGGTACGGGCCCATCCT
CTCCGTCTGGTTCGGCTCCTCGCTCACCGTCGTCGTCTCCACCTCCGAGCTGGCCAAGGA
GGTGCTCAAGGAGCACGACCAGCAGCTCGCCGACCGCCCCCGCAACCGCTCCACCCAGCG
CTTCAGCCGCAACGGCCAGGACCTCATCTGGGCCGACTACGGCCCGCACTACATCAAGGT
GCGCAAGCTCTGCAACCTCGAGCTCTTCACCCAGAAGCGCCTCGAGGCGCTCCGCCCCGT
CCGCGAGGACGAGGTCACCGCCATGGTCGAGTCCGTGCACAGGGCCGGCAAGGGAGGCAA
GCCGCTGGCTGTGCGGGAGTTCCTGGCCATGGTCGGATTAACAACATCACGCGGCTCGCC
TTCGGGAAGCGGTTCCTGACAGCGCAGGGCGAGCTGGACGAGCAAGGACGCGAGTTCAAG
GAGATCGTCAATAACGGGATCAAGATCGGCGCGTCGCTGTCCATCGCCGAGCACATCCGG
TGGCTCCGGTGGCTCACGCCGGTCGACGAGGTGGCCTATCAAGCCCACGGCGACAGGCGC
GACCGGCTCACCGTCAAGATCATGGAGGAGCACGCCAGGGCCTTTGAGCGGAGCGGCACC
AGCAAGCAGCATTTCGTCGACGCGCTCTTCACGCTCCGGGACAAGTACGACCTCAGCGAC
GACACCGTCATTGGCCTCCTCTGGGACATGATCACCGCCGGCACGGACACGACGGTGATA
ACCGTGGAGTGGGCGGTAGCGGAGCTGGTGAGGAACCCCAGGGTGCACCACTTCACCTGG
GCGCTGCCGGACGGGGCCCGGACGGAGGACCTCGACATGATGGAGTCCCCCGGGCTAATC
ACATTCATGCGCACGCCGCTGCAAGTCGTCGCCACGCCGCGCCTCGAAAAGGAGGAGCTC
TACAAGCGGGTGCCTGTCGACATGTGATGTGAGCGAAGCGTCTCGGCGGATGGTTCAAAG
CTCAGGCTTCAAATTAAAGTGCATTGTGTCGACATGTCCCTTTTTTCTGTATTTTTCATG
GCTACTACATCGATGCATTTGTTTTGTAGTTAAATTAATCACTAATATATATACCCATGC
GTTGCGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41440.1	513	2e-126	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi2g21300.1	515	4e-131
Arabidopsis v10	AT2G40890.1	508	1e-107	\| Symbols: CYP98A3 \| cytochrome P450, family 98, subfamily A, polypeptide 3 \| chr2:17058291-17060532 REVERSE LENGTH=508