barSeed - Barley Seed Development Database

Probe CUST_12112_PI390587928

Source Contig U35_6144

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12112_PI390587928	Hv_44K_v2	CTTATGAGGCAACTATTTGTACTAGTTGACATCCTTTAATCGATGTTTCCTACACCAAAA	913	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.445	1.584	1.240	0.939	0.358	0.356
Raw	2212.953	3825.837	2592.460	3092.331	407.578	445.634

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75343.1	1939	3e-22	1854 - 1909	100	56 / 56	plus	ABC12981
JLOC1	JLOC1_50258.1	2035	1e-22	1854 - 1909	100	56 / 56	plus
Harvest21	ABC12981	986	3e-25	14 - 73	100	60 / 60	minus	ABC12981
Harvest35	U35_6144	986	3e-25	914 - 973	100	60 / 60	plus

Contig Sequence (986 bp)

>U35_6144 986 Hv_44K_v2
GTCCCCCGGGCTGCAGGGGAGGCCATGGCATTCCCCGGGACGCGGGAACGTTCCGGGTGC
TGATAAAAAATCTCTGTAAGATTCGCAGGACTGAGGATGCAATTAAACTGTTCGGACAAA
TGGGCGAGTGGGGATGCTCGCCAGATGCTGACACATATCTTGTACTTATCAAGAGCTTGT
ATCAGGCTGCCCGGATTTCTGAAGGGGACGAGATGATGATTTGGATGCGATCCGCAGGGT
TTGGAGATAAACTTGATAGGAAGGCGTATTATGGGTTCATCAAGGTTTTATGTGGGATTG
AAAGGGTTGAGCATGCTGTCAAGGTGTTCCGTCTGATGAAAGGATATGGGCATGCACCTG
GAACGAAATCGTATAGCCTGCTGATCGAGAAGCTGGCTAGGCATAATTTAGGGGATCGTT
CAAATGCGCTGTTCAGGGAGGCATTAGCGCGTGGAGTTACTGTGACACCAGGAGTCTATA
AGATTGACAAGGTATGTGAAAGAGAAGAAGGAGAAGAAGGTGAAGAAAAGGCTGACTTTA
CCGGAGAAGAAGATACTAAAGAGCAAGCGGCTGTACAAGCTCAAAATGAGCTTTGTCAAG
AAGCCTAAGCGGCAAATGAAGTCTTGAGCATACTTGGGGTTGAGTTGGAGCGGATGATCG
TTGGAAGGGAAAGCATCAGACGAAGCCCGCCCACAGTTTAGAAGAGCAGAAAATTGGTGC
CTGTGAGCTGCGCCCGCCATTGCGAGCGGCTAACAGACAACATTACCTTTCCGATCCGAG
GGCTTGATATGAGCTCACTCTTTTTTGTTGATGTACTGCCGAATCTATGTTGATGTTCCC
TGCAAATGTTGCAGCAGAAATAATGCGTGTTTTGCTTGCTAGTTACCACATCGTGAGAAG
TTGCTTCTGTCTTCTTATGAGGCAACTATTTGTACTAGTTGACATCCTTTAATCGATGTT
TCCTACACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41260.1	487	4e-95	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g22060.1	482	6e-96
Arabidopsis v10	AT5G60960.1	521	5e-60	Pentatricopeptide repeat (PPR) superfamily protein \| chr5:24528423-24529988 REVERSE LENGTH=521