barSeed - Barley Seed Development Database

Probe CUST_12110_PI390587928

Source Contig U35_6147

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12110_PI390587928	Hv_44K_v2	GCAACCGCGGTGCAACAGATGGCATGTTGAAGTACTTATAATCAGATGATCCAAGACAAC	681	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.025	0.022	0.772	2.140	1.363	1.458
Raw	33.108	40.094	1450.482	5989.893	1413.447	1631.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72737.1	857	2e-24	779 - 838	100	60 / 60	plus	None
JLOC1	JLOC1_48400.1	854	8e-25	775 - 834	100	60 / 60	plus
Harvest21	ABC12735	782	3e-25	682 - 741	100	60 / 60	plus
Harvest35	U35_6147	782	3e-25	682 - 741	100	60 / 60	plus

Contig Sequence (782 bp)

>U35_6147 782 Hv_44K_v2
ACGAGGCATAAGTGATCTCGAGTGTCTACACCACCACATAGCCAATTGCATCCCATAGAG
CCACCGCCATGGCAGGCCACCTTCAAGTTCAGCAGCAACAACAACAACAGTTGGAGCTTC
CACCGGGGTTCAGGTTCCACCCTACTGATGAGGAGATCATCACCTCCTACCTTGCCCCTA
AGGTTCTCAACCCAGCGTTCGAAGCCACGGCGATCGGGGAGGTGGACATGAACAAGAACG
AGCCATGGGAGCTTCCCAAGAAGGCCAAGATGGGTCAGAATGAGTGGTACTTCTACTGCC
AAAAGGACCGCAAGTACCCCACCGGGATACGAACCAACCGGGCCACCAAGGTTGGCTACT
GGAAGGCCACGGGAAAGGACAAGGAAATCTTCAACCCACATTGCACGTCCATGCTCATCG
GCATGAAGAAAACATTGGTGTTCTACAAGGGCAGAGCTCCCAGCGGGGAGAAGACCAACT
GGGTCATGCACGAGTACAGGCTCGAGATCAGCAAGCAGTCAACATCCGGCCTGCCCACCT
CCATCGCAAATGCCGCTGCCATTAACATGTCTTCCAAGGAGTATGTGGTTTGCAGGATCT
TCCAGAAGAACACTGGAAGCGGGCCGTCATCCATGGTGTCATATGAGGACGTTGGGACCG
GTCCGAGCAACAACGACCAGAGCAACCGCGGTGCAACAGATGGCATGTTGAAGTACTTAT
AATCAGATGATCCAAGACAACATATATATATATATATATATATATATATATATATATATA
TA

Homology of Contig U35_6147 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g29840.1	334	3e-71	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi4g34157.1	355	7e-67
Arabidopsis v10	AT5G39610.1	285	1e-74	\| Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC6 \| NAC domain containing protein 6 \| chr5:15858591-15859650 REVERSE LENGTH=285