barSeed - Barley Seed Development Database

Probe CUST_12104_PI390587928

Source Contig U35_6153

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12104_PI390587928	Hv_44K_v2	GGCCTATCAGTGCAACTGAAATTTTATATGTCTCTTGTGAGAGGAATATCCATTTGCCAA	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13768.1	1780	2e-24	11 - 70	100	60 / 60	minus	ABC15576
JLOC1	JLOC1_9351.1	1843	8e-25	1733 - 1792	100	60 / 60	plus
Harvest35	U35_6153	689	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_6153 689 Hv_44K_v2
CGAGCCAGAGATCAAGCTGACCACGCTGACCAAGGACGACGAGTTCCTGGTGATCGGCAG
TGACGGGCTGTGGGACGTCTTCTCGAACCAGAACGCCGTGGACTTTGCCCGGCGGCGTCT
CCAGGAGCACAACGACGTGAAGCTCTGCTGCAGGGAGATCGTCGAGGAGGCGATACGACG
GGGCGCCACGGACAATTTAACAGCAGTGCTGGTCTCATTCCACCTGGTGGCGCCTCCTCA
GATCAGGGCGAGCCAGCCCCGCAGGGTGGCGCGGAGCATTTCGGCCGACGGGCTCAACAG
CCTCAGGATACTCCTAGGGAGCCAATGACGGCGCACTTCCTTCGCCGTGACCGGGTGCCG
TGCCGGTGCTTGCTGAGTTCTAATTGTATGTAGTCGTGTCGGTGCTTCACTGTTGTTGTT
ATGTTACCCCATTGTTGTTGAGGCAGTGGCTGTTATTCTTGTTGGTAATTAAGCCAACGA
ACATGTGGGCTCACGCTTGTGAGCATTTCTTAGCTGCTGGAACTAGACATGTCCTGGAGG
AGAGGCTGTGTGCCTTTGTTGTACCATTATACATTTCCCTGTTTTTCATCTGTAAATAAG
ATTGTCGGGGCCTATCAGTGCAACTGAAATTTTATATGTCTCTTGTGAGAGGAATATCCA
TTTGCCAAGTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08140.1	361	1e-56	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi1g47710.1	354	3e-61
Arabidopsis v10	None