barSeed - Barley Seed Development Database

Probe CUST_120_PI390587928

Source Contig U35_4807

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_120_PI390587928	Hv_44K_v2	GTGCTTGCCTTGTGAATTTGTAAAAGAATGCCTTTTAAGTACAAGTTCAGTCAAACTTGA	944	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.606	1.720	1.081	0.885	0.387	0.398
Raw	2111.377	3608.789	1938.907	2537.833	381.726	431.745

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63530.1	1510	2e-24	103 - 162	100	60 / 60	minus	ABC10444
MLOC	AK252740.1	1808	3e-22	1636 - 1694	98	59 / 60	plus	ABC10444
JLOC1	JLOC1_41622.1	1879	8e-25	1645 - 1704	100	60 / 60	plus
Harvest21	ABC10444	1115	3e-25	945 - 1004	100	60 / 60	plus	ABC10444
Harvest35	U35_4807	1115	3e-25	945 - 1004	100	60 / 60	plus

Contig Sequence (1115 bp)

>U35_4807 1115 Hv_44K_v2
GAAGAATGGTCTGCTAAGTCTCCCCGAGCTAACAATGTTGGTATATTTACTAAACCTTGG
TTCACTGCTGGAACTTTCCTGTGCAAGGATGATCACCGTAAAATTGTAGCCTGTACAAAT
AATCATCAGGTTCGCTTATACGATACTGCTTCGCAAAGAAGATCTGTTGTTTCAGTTGAT
TTTAGGGAGTCACCAATCAAGGCAGTTGTAGGGGATCCAGATGGACATACTGTCTATATT
GGGACAGCAACAGGAGACCTCGCTTCCTTTGACATGAGAACTGGAAAACTACTCGGATGC
TATGTTGGTAAATGCAGTGGAAGTATTAGGTCGATAGCTAGGCATCCGGAGCTGCCTTTG
ATAGCATCTTGCGGATTGGACAGCTACTTACGAATCTGGGATACAAATACAAGGCAGCCG
CTTTCTGCTGTCTATCTCAAGCAGCACCTCACAACAGTGGTTATTGATTCACATTTCTCA
GCTGAAGAATCTGAGGAGAATAAATCCAAGCAGCCGGATTCTTCAATGGTTGCTGAAGTC
CGAAGGGCAAAGAAGGAAAAGAAGAATGTATTGGTTGAAGAGGATGAGGAAGGAACTCAA
ATGGTGGATCCTGATGACTGTGATGCTGAAGCAGTCAGAAAGGAAAAGAAGAAGAAAAAG
AAGAAAACGGTTGCCGAGGATGATGGAACGCAAATGGTCGACCCGGATGAAGGCGATGGT
GAAACAGTCAGAAAGGAAAAGAAGAAAAAGAAGAATAGAAGGGTTGCAGAGGATGAGGAA
GGAACTCAGATGGCTGACCTTAATGACAGTGATGCTGAGATGTATGCCTCAAAGAGAATA
AAATCTGAATCCGGCGAAAGAAGCAAAGGCACGAAAAAGAAAAGCAAGAAGCAACAAGTT
GCGTAAGACATTTGGTCTGCTGGAATTATTGACTTCTGACCACGGTGCTTGCCTTGTGAA
TTTGTAAAAGAATGCCTTTTAAGTACAAGTTCAGTCAAACTTGAATGGTATGGTTCATTT
GTAATTTTTCCTTGAAATATTACCTGCTGTTTTACAATGTTATGATAAGTGATTTGAAAT
ATTATCAAAACCGAACGGTATGGTTCATTTATACT

Homology of Contig U35_4807 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32350.1	434	2e-113	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g26700.1	499	4e-149
Arabidopsis v10	AT1G29320.1	468	9e-72	Transducin/WD40 repeat-like superfamily protein \| chr1:10255355-10258238 FORWARD LENGTH=468