- Probe CUST_1209_PI390587928
- Source Contig U35_42944
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1209_PI390587928 | Hv_44K_v2 | CTCAGCAGCACACCAACCATTCCCCCGAGCAGCAGTTGGCTTCGCTTTCGTTAAATACGG | -1 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.345 | 1.187 | 1.149 | 0.873 | 0.538 | 0.569 |
| Raw | 10947.667 | 14579.297 | 12838.033 | 14841.993 | 3286.360 | 3824.957 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC38970 | 102 | 1e-23 | 1 - 61 | 98 | 60 / 61 | minus | |
| Harvest35 | U35_42944 | 102 | 1e-23 | 1 - 61 | 98 | 60 / 61 | minus |
Contig Sequence (102 bp)
>U35_42944 102 Hv_44K_v2 CCGTNATTTAACGAAAGCGAAGCCAACTGCTGCTCGGGGGAATGGTTGGTGTGCTGCTGA GCGCTGCGGAGAAACTTCATAGCTTCAGCAACCTTGGCCTTG
Homology of Contig U35_42944 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |