barSeed - Barley Seed Development Database

Probe CUST_12097_PI390587928

Source Contig U35_7253

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12097_PI390587928	Hv_44K_v2	AATATATGGCAGGACATTACATGAAACAAGGTGCGAGTTCCTTTTTGCCAGTGATGGCTC	970	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.875	1.122	1.484	0.937	0.574	0.618
Raw	420.365	345.185	453.175	413.738	98.457	115.007

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250416.1	2666	2e-24	985 - 1044	100	60 / 60	plus	ABC08108 ABC29965
MLOC	MLOC_54574.1	1767	2e-24	1489 - 1548	100	60 / 60	minus	ABC08108 ABC29965
MLOC	MLOC_54574.2	2592	2e-24	1464 - 1523	100	60 / 60	minus	ABC08108 ABC29965
JLOC1	JLOC1_35127.1	2746	8e-25	1022 - 1081	100	60 / 60	plus
Harvest21	ABC14832	1163	3e-25	971 - 1030	100	60 / 60	plus
Harvest35	U35_7253	1164	3e-25	971 - 1030	100	60 / 60	plus

Contig Sequence (1164 bp)

>U35_7253 1164 Hv_44K_v2
ACCATTCACCAGCCACCCCCCCCCGTCCCTACCGTTCCCCTACCCATGGCGAGGAAGGTC
GCGCAGCGCAGGCCGGCGGCGCCTCCCGCGCCGCCCGTGGCGAAGAAGGTGGTCAAGGTC
CCCTCGAGGACGGCCAAGAGGGCGGCGCCGAAGAAGCAGAAGCTTCCCGAGCCCTCCTCC
TCCGACGACTCCGAGGCGGAGCAGCCGCTCCACGAGGAGGAGGAGGAGGAGGATTCAGAC
GTCGAGGCCCCCTCCGATTCCGATGCCGAGGAGCTCTCGGGCTCGGACGCCGATGGGGTG
GAGGACGATGATGACGACGACGAGGACGACGAGGATGAAGACGTCGAAGACGACGATCCC
CTCGCCGGCGATTTCCTTGCCGGCAGTGACGACGACAGTGACGAGGGGGGCGACTCTGGA
GAGGAGTCAGACGGGTCTGGTGACTTGGAGGCAAGGTCAGCTGCTCTTGATCGACAGAAG
GAGCAGGCTGAAGAAGATGCAGCGGCGGACCTTGCACTCAACATAAGATCAGAGTCTGAT
GAATTTCGTTTGCCCACTAAGGAGGAGTTGGAAGAAGAGGCACTTGGACCACCTAACCTG
CCAAATCTTAAAAGGAGGATCTCAGAAATTGTACGGGTACTCTCAAACTTTAGCAAGCTG
AGGCAAGAAAATGTTGCCAGAAAAGATTATGTCGATCAGTTCAAGACTGACGTGATGGCA
TACTATGGATACAATGAATTTCTCATTGAAGCATTTGTTGAGATGTTCCCAGCTGTTGAG
GTTGTTGAGCTACTTGAATCATTTGAAAAAAGACCCCCCGAGTGCTTGCGTACAAATACA
TTAAAGACCCGTAGGAGGGATCTTGCTGCTGCTCTTATTCCAAGAGGGTTTAATCTGGAT
CCGATTGGAAAATGGTCAAAGGTAGGATTAGTTGTGTATGACTCCAGTGTTTCTTCTGGC
GCCACTGTTGAATATATGGCAGGACATTACATGAAACAAGGTGCGAGTTCCTTTTTGCCA
GTGATGGCTCTTGCTCCACAGGAGAAGGAGCGAATAGTTGATATGGCAGCTGCCCCAGGT
GGCAAGACCACATACATTGGAGCTCTGATGAAAAATACTGGAATAATCTATGCAAATGAG
CTTAACGAGAAAAGGTTGCATGGA

Homology of Contig U35_7253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49270.1	694	3e-141	protein\|NOL1/NOP2/sun family protein, putative, expressed
Brachypodium v1_2	Bradi3g56470.1	774	1e-144
Arabidopsis v10	AT4G26600.1	671	9e-96	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:13419629-13423418 FORWARD LENGTH=671