barSeed - Barley Seed Development Database

Probe CUST_12093_PI390587928

Source Contig U35_7257

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12093_PI390587928	Hv_44K_v2	CCAGTATACCATGCAACCTGGATCTTTCAAAGATATATCATATGGCAGTGCTATTTCAGT	493	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.626	2.095	1.713	0.567	0.155	0.119
Raw	1637.710	3276.323	2296.410	1198.550	117.480	97.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65248.1	1524	2e-24	1454 - 1513	100	60 / 60	plus	ABC24681
JLOC1	JLOC1_42924.3	1410	8e-25	1287 - 1346	100	60 / 60	plus
JLOC1	JLOC1_42924.2	1394	8e-25	1271 - 1330	100	60 / 60	plus
JLOC1	JLOC1_42924.1	1452	8e-25	1329 - 1388	100	60 / 60	plus
Harvest21	ABC24681	594	3e-25	42 - 101	100	60 / 60	minus	ABC24681
Harvest35	U35_7257	594	3e-25	494 - 553	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_7257 594 Hv_44K_v2
AGCCTCAACCTCGAGAACAACGTACTCCCAAAGGTATCATTGCCCTTCCTGATCGTTCAC
GGAGGTGACGACAAGGTGACGGACCCGTCGGTGAGTGACCTCCTCTTCCGGTCGGCAGTG
AGCCAGGACAAGAAGCTCAACCTCTACCCCGGCATGTGGCACGCCCTCACCTCCGGCGAG
AGCCCCGAAAACATCCACATCGTTTTCCAAGATATCATCGCGTGGCTCGACCAAAGGTCA
TTCCCCAAATCATCATCGTCGGCGGCTGCCTTGGACTTGTCGTCGGAGATGGAGCAGAAG
GCCAAGCACGATGAGCAGAATTTCGACAAACAAAATAGCACAAAAGCTAATGACGATGAG
CAGCTGTAGGCATGGTTAAGTACAGCTGGGACTTGGAATCATGTTAGTTAACTGGCTGGC
TACCCGTGTGGTGTATTAATTCATTATTGTACTAACTTGCTAGCTAGTTCGTTGGTTTCT
GTCTTCTTGTATACCAGTATACCATGCAACCTGGATCTTTCAAAGATATATCATATGGCA
GTGCTATTTCAGTTTTAAAAAAAATCTTCATCGTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_7257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None