barSeed - Barley Seed Development Database

Probe CUST_12084_PI390587928

Source Contig U35_7268

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12084_PI390587928	Hv_44K_v2	TGAGTGCAGAAAATGAACGTGTTCTTCGTGGTGAACAGGTTAAGCGAATCAGGAACGATT	901	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12496.1	1301	2e-24	1174 - 1233	100	60 / 60	plus	ABC16232
MLOC	MLOC_12496.2	1290	2e-24	1045 - 1104	100	60 / 60	plus	ABC16232 ABC47593
Harvest21	ABC16232	953	3e-25	186 - 245	100	60 / 60	minus	ABC16232
Harvest35	U35_7268	1146	3e-25	902 - 961	100	60 / 60	plus

Contig Sequence (1146 bp)

>U35_7268 1146 Hv_44K_v2
CGCCGTCCCGAGCGACCAAGAGGAGAGAAAAGGAGGAAGAAGATGGCCACCTATTTCACG
CTCAACACCGGGGGACGCATCCCCTCGGTAGGCCTCGGCACCTACAAGTCCGGCTCCGGC
GTCGTCGCCGGCGCGGTCACCGCTGCCATCAAGGCCGGGTACCGGCACATCGACTGCGCG
CCGCTGTACAAGAACGAGAAGGAGATTGGCGTTGCATTGAACAAGGTCCTCGATGAAGGC
GTCGTCAAACGAGAAGACCTCTTCATCACTTCGAAGATATGGTGCAGCGATCTCGCGCCC
GAAGACGTTCCGTCGGCAATCGACACCACTCTGAATGATCTGCAGCTGGATTATCTTGAC
CTGCACCTGATTCACTGGCCCTTTCAGATAAAGAAAGGCAGTGAGCTGAGCCCTGAGAAT
TTTGTCGAGCTCGATATGCCCCAGACCTGGCGGGCAATGGAGAAGCTGTACGATTCAGGC
AAGGCTCGCGCAATAGGCGTAAGCAATTTTTCGACCAAGAAGCTGGCCGATCTGCTCGCT
GTGGCCCGTGTTCCTCCGGCCGTTGATCAGGTGGAGTGCCACCCTGGTTGGCAGCAGGCC
AAGCTCAGAGCCTTCTGCCGCACCAATGGAGTTCATTTCTCTGCGTATGCGCCGCTAGGT
AGGATGAAAGTCGTCGCGGATAACCCGGTGGTGACATCGATAGCCGAGAGCTTGGGGAGA
ACGCCGGCACAGGTCGCTCTACGATGGGGCATCCAGCAGGGTCAGAGCGTGCTTCCTAAA
AGTGCGAATGAGTCGAGGTTGAAGGAGAACATTGACCTGTTTGGCTGGTCTATTCCTCAA
GAACTGTGTGCCAAGTTTTCTGAAATTGAACAGGTGCAGAGCCCTTTTTCAGTTATATCC
GTGAGTGCAGAAAATGAACGTGTTCTTCGTGGTGAACAGGTTAAGCGAATCAGGAACGAT
TCATTGGTGCACCCTCGGAGCATTTACAAAACGATGGACGAGCTCTGGGATGGTGAGATA
TAACTGAAAATCAGCGCCGGAATCTGCGACTAGAAAGGAGCCGAGGAATAGAAGCATATA
TATAGAAGAGTGAATTCCGGGTTTTACCTTGTAGTTGTACATTTGTCACACATATTACCT
TATTTA

Homology of Contig U35_7268 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62880.1	305	1e-168	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi2g54900.1	307	2e-167
Arabidopsis v10	AT2G37790.1	314	3e-126	NAD(P)-linked oxidoreductase superfamily protein \| chr2:15838838-15840752 FORWARD LENGTH=314