barSeed - Barley Seed Development Database

Probe CUST_12081_PI390587928

Source Contig U35_7271

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12081_PI390587928	Hv_44K_v2	GTACTTAGTCCACCATATTCAGAGAAAGGAAGAAACAATATGATACTGGTTGATTCTATG	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373992	1273	2e-24	1213 - 1272	100	60 / 60	plus	ABC25993
MLOC	MLOC_5883.1	2409	2e-24	702 - 761	100	60 / 60	plus	ABC25993
MLOC	MLOC_5882.1	731	2e-24	598 - 657	100	60 / 60	plus	ABC25993
JLOC1	JLOC1_3813.6	1227	8e-25	1032 - 1091	100	60 / 60	plus
JLOC1	JLOC1_3813.5	1349	8e-25	1154 - 1213	100	60 / 60	plus
JLOC1	JLOC1_3813.4	1470	8e-25	1275 - 1334	100	60 / 60	plus
JLOC1	JLOC1_3813.3	1199	8e-25	1004 - 1063	100	60 / 60	plus
JLOC1	JLOC1_3813.2	1760	8e-25	1565 - 1624	100	60 / 60	plus
JLOC1	JLOC1_3813.1	1319	8e-25	1124 - 1183	100	60 / 60	plus
Harvest35	U35_7271	543	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (543 bp)

>U35_7271 543 Hv_44K_v2
AGGGCAGGGTTGGGGAAAGATATCTGCTCACCGGCGAAAACTTGTCATTCATGCACATTT
TCAATATGGCTGCCAATATCACAAACACAAAGGCCCCATACTTCCATGTACCACTCTGGT
TGATTGAAATATATGGGTGGATTTCAGTTTTCATTTCTCGCATCACTGGAAAGCTCCCTC
TTATCAGCTACCCCACGGTGCGTGTTATTAGGCATCAATGGGCGTATTCATGTGATAAAG
CGAAGAGGGAACTGGGCTACAATCCAAGAAACTTGACTGAAGGCCTAGCTGAGATGCTTT
TATGGCTCAAGAACGGGAAACTGATCAAATTTTAGTGTCCTACCCTGTTATTGCTTCCGT
TACATTTCACGCCTCATGTAGAACATGATGTTTCTGTACTAAAATCATCGACATGTATAG
CCACTATCTTGTTGCATCAAGTTGAGATGTAGTAATGATGTATAGTACTTAGTCCACCAT
ATTCAGAGAAAGGAAGAAACAATATGATACTGGTTGATTCTATGCAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_7271 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08630.1	114	9e-68	protein\|NAD-dependent epimerase/dehydratase, putative, expressed
Brachypodium v1_2	Bradi1g72320.1	333	1e-66
Arabidopsis v10	None