barSeed - Barley Seed Development Database

Probe CUST_12076_PI390587928

Source Contig U35_7276

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12076_PI390587928	Hv_44K_v2	CAGAGGTAAACTGAGTGAATGAGTGTAAATGCAATTTTGGCAACAGTTCTGAACAAAAAA	948	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51331.1	3492	3e-22	23 - 78	100	56 / 56	minus	None
MLOC	MLOC_51331.2	3853	3e-21	1 - 54	100	54 / 54	minus	None
JLOC1	JLOC1_32786.1	3792	1e-22	3701 - 3756	100	56 / 56	plus
Harvest35	U35_7276	1019	3e-25	949 - 1008	100	60 / 60	plus

Contig Sequence (1019 bp)

>U35_7276 1019 Hv_44K_v2
GTTCAAAGAGAAGTAGCCTTGTTGAGAAGTTCCCAAAATAAATTGTATGTTCTGCTAGTT
GATATGGAGCAAGATGAACAAGAAATTATGCCAAGAGTTTTGGGGTGCTATAGGCTTGAA
GATCTGGAAAAAGTTTTGACTGGTCTGGGTCTACAAGCACTAAGGGTACACATGGCAGAT
CATACAGCTCATCTATTCTTGACACGTACCTCCAAGGAAGCGCAAGATGTACTTTGGCTC
TTGAATCTGTTCAGCTTTCCACAGTTAACTAGTGGGGTATCTTTGCAAAGTTGGGAGAAG
ATCCAAGTTAAATTGCTCGAGAAATGTCTATGTGCAAGTTTGAAGATGGGAATATTTCTC
TACTCCATGTTGATGTTCTGGAAGAATGATGCGGAAGAGGAATCCTTGGTTATTAGATCC
CTTGTTGTTACTGAAGGATCAATATGTGTGTGCATTGAGAACCTACATCAGTTTGGTTGC
TTTCCTGATGATTCACATCCTCCATATTTTTCTCTTGACGAGTGCTGTTCTATCAACAGT
ATTAAGGAAGTGGTCGTGGATCAGCGTGACAAGGAATGCTTGACATTAATTTTGCACAAA
CACATAAACGAAGGAAGATTTCACAGCAGCACTGGAAATTCGCAGAAGAAGCAAGCAGAT
GAAAATTACACAGTACATACATGGAAAATGAAGTGGTTTTCTGAGGAAACTCTTTTGAAG
TTCATTTCTGTACTTAAGGCTCTTTACTCTGGAGTAGTTTCTTCACCGTTACCTGTAAAA
TGTATATCCTGATGTGTTAGTTCTTGTAGTCATGTAGTGATTTCATTCATTTGTTTGGGG
GTTGTATTTAGTTGTTAATCTGTACAGTTTGTCCATTAGCCCGCTAGGTTGTGCTTTCTT
TATTCTTTTGATTTATGAAAAAAATCCTCGCCTTAAAGTTGTACAGAACAGAGGTAAACT
GAGTGAATGAGTGTAAATGCAATTTTGGCAACAGTTCTGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_7276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12160.2	964	1e-121	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g69590.1	1116	2e-141
Arabidopsis v10	None