barSeed - Barley Seed Development Database

Probe CUST_12069_PI390587928

Source Contig U35_7285

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12069_PI390587928	Hv_44K_v2	GTAGGATATATTTAGGGAGCAACTATATATATAGTGTGCGCTTACTTCTCGTTCCATAAA	458	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	57.689	16.399	2.096	0.144	0.172	0.153
Raw	2309.130	1024.873	113.965	10.955	2.682	2.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC15886	523	3e-25	459 - 518	100	60 / 60	plus	ABC15886
Harvest35	U35_7285	523	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_7285 523 Hv_44K_v2
GTATCATCACATTTCCCATCCTCTCGAGTCTTGATTTCCTGAAGACATGAAGCCTTGCCA
AGTAACACTCCTCCTGGCCATGGTCATTCTTGCCTCATCACCGGCCATGGCAACCAAGTG
CCCTCCAGAGTACACCTGCACCAAGTACATCAACAAGGGTATGTGTGACGCTGCCAAGTG
CATGGCGGACCGTGTGAGCGCATACAAGGGCGCAGGGGAAGGTCAATGCTTCACTCAGGG
ATGCAGGTGCTCCTACTGCTGCAAGCCGCATCAAGGAACTATTTAAGCGAGCTCGGTCGC
CACGCCGTTTGGAGACGTGTTGATGGGTGATGTGGTGCAAATTGCAAACTTAATTAGAAT
TCGTTTCTTCTGCCTTTTTGGAGGTAGTTGTAAGAGTCTCTTGTAGCATGATCGTTGTTC
TATCTTGGAAGAAGAGTAACAAAAAAAATGGACGTATTGTAGGATATATTTAGGGAGCAA
CTATATATATAGTGTGCGCTTACTTCTCGTTCCATAAAAAAAA

Homology of Contig U35_7285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None