barSeed - Barley Seed Development Database

Probe CUST_12061_PI390587928

Source Contig U35_7293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12061_PI390587928	Hv_44K_v2	GCTGTTGCATTACTGTTGGTTCGCTTCTAAATTGTTACGGTAGGATGCACCTCACCTTGA	726	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.295	1.293	1.097	0.855	0.339	0.387
Raw	1695.903	2749.713	1972.293	2461.603	338.792	417.336

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_6434.1	1378	8e-25	1212 - 1271	100	60 / 60	plus
Harvest21	ABC18305	806	1e-23	727 - 787	98	60 / 61	plus
Harvest35	U35_7293	859	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_7293 859 Hv_44K_v2
AGCAACCTGGTATTTGTATTGATCGATGAAGTTGAAAGCCTTGCTGCTGCCAGGCAGGCT
GCCATATCTGGCTCTGAGCCTTCAGACTCCATTAGGGTGGTAAATGCCTTGCTAACGCAA
ATGGACAAACTGAAGGCTTGGCCAAATGTTATCATTTTGACAACATCAAATATCACTACA
GCTATCGATATTGCATTTGTTGACAGGGCAGATATCAAGGCATACGTCGGCCCCCCTACT
CTTCAAGCACGCTATGAGATTTTGAGGTCGTGCATAGATGAACTCTTCCGAGTAGGAATT
CTTAAATATCCTCAGGGTGGTGATTTGCCTTGTATTCTGAGTTATTCAACCCTGAAGGAG
AAGTTGCACTGTCCTGAGGCTACAGAACCCCATACACTTCATCTCTCCAAACTACTGCAT
GAAGGTGCAGAACTGTGTGACGGATTGAGCGGAAGATCATTGAGAAAACTCCCTTTCCTG
GCCCACGCTTCCGTTCCCAACCCTTCATGCTGTGATGCTACTTCTTTCATGCACACGCTG
ATACAGACCGCGCGGAGGGAGCTCTTGGAATCACGCGGCTGATTCCTCGTGGATTGCTTG
GAAGAGCAAGGGGCTAACAGTTCGATACAAGTACCATGTTGCCGATATGATGCATAGTTT
GAGCTCGAAGACTGGTGTTCTGAGATAAAAGCAAATCCATTCCATCTCTGAGATATAGGT
GCCGTTGCTGTTGCATTACTGTTGGTTCGCTTCTAAATTGTTACGGTAGGATGCACCTCA
CCTTGAGGGCAGCTGTGACTTTTTTTGCGGTGAAGTTAATGCAATACATTGGTCACTTGA
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40290.1	486	4e-104	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi5g13467.1	477	1e-124
Arabidopsis v10	AT4G24710.1	475	2e-74	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr4:12745752-12748995 REVERSE LENGTH=475