barSeed - Barley Seed Development Database

Probe CUST_12047_PI390587928

Source Contig U35_12307

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12047_PI390587928	Hv_44K_v2	CCCAACATGAAAATGACTAGTAGAAGTTATTGCCTTTGTCTGAATCTTCAAAATCAAGAC	810	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.348	1.286	0.880	0.344	0.391
Raw	322.264	541.625	447.249	479.650	67.456	82.254

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30926.1	1143	2e-24	142 - 201	100	60 / 60	minus	None
Harvest21	ABC24923	883	3e-25	811 - 870	100	60 / 60	plus
Harvest35	U35_12307	883	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (883 bp)

>U35_12307 883 Hv_44K_v2
CCCCCGAACCTAGGCCCTAAACCCCAGCGCCCGCCGACGCTCGCCGCCTCTCGCCGTCAT
GGCCGACGCCGGCAACAAGTCCCAGTACGGTGAACGCCTGCCGCATGGCGCCCCCGACGG
ATCCCGGCGTGCCTACACCCCGTACCAGCCTGAGGGCATCAGCCTCCCCTCGTGCCGCGC
GATCTACGACCTACCGACCTCGCCGGAGGTCCTCTTCCCGGAGGACATGGACACCCGCAA
CTGGGGCAGGAACCTGTCGCTCTACCCCGGATATGGGTACCTCGTCGGCGCCGCGGCGGG
GGCCGCCAAGGGGTTCAAGCGCGCGGTGGCGGACGCGGAACGCGGCGAGTCGTTCAAGCT
CCGCACCAGCCGCGTGCTCAACCATTGCGGCTCCGTGGGACGCCGGTACGGCAGCCATGT
CGCCTTGATCGGCCTACTCTTCGCCGGGACCGAGTGCGCCGAGGGCAACCTTCGCGACGC
TGACGACTGGCGCAACATCATCGCCGCAGGGTTTGGGACCGGCATGCTCTACCGTGCACC
TTCGGGCCCGCGATCCGCCATCGTTGGTGCCGCCGTCGGGGGCCTCATGGCTGCTGCCGT
CGTCGCGGGGAACAAGGCGCTCAAGAGAAACGGTCCTACTCCGCCCTTCTAAATCGGAGC
ACTCGTTAGTAAGTTTTGATCTACTGGGTTGGTGGATTTAGCAGTAGTTGAATTTCAGGT
GAAGATCTTTGTTATACGTATGAGTGTTATCTACCTTAACAAGCTTTGACGGTGTCGGCT
AGTGCACTGGTGTGCAATCTGTCGAATTGGCCCAACATGAAAATGACTAGTAGAAGTTAT
TGCCTTTGTCTGAATCTTCAAAATCAAGACTGTTTTGGTGATT

Homology of Contig U35_12307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g18600.1	198	2e-57
Arabidopsis v10	None