barSeed - Barley Seed Development Database

Probe CUST_12018_PI390587928

Source Contig U35_12331

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12018_PI390587928	Hv_44K_v2	TGTGCTCGACGTGGTGGACTGCGAGCTCAACGAGGAAGAAGACGACGAGGTGTCGGACTG	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376072	2459	2e-24	772 - 831	100	60 / 60	plus	ABC15745
MLOC	MLOC_73542.2	2567	2e-24	535 - 594	100	60 / 60	plus	ABC15745
MLOC	MLOC_73542.3	1747	2e-24	30 - 89	100	60 / 60	plus	ABC15745
MLOC	MLOC_73542.1	2125	2e-24	408 - 467	100	60 / 60	plus	ABC15745
JLOC1	JLOC1_48964.1	2174	8e-25	395 - 454	100	60 / 60	plus
Harvest21	ABC21819	422	3e-25	19 - 78	100	60 / 60	plus
Harvest35	U35_12331	423	3e-25	19 - 78	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_12331 423 Hv_44K_v2
TTCTCGCAGAGGGCTGCGTGTGCTCGACGTGGTGGACTGCGAGCTCAACGAGGAAGAAGA
CGACGAGGTGTCGGACTGGGTGGCGGCGTTCCCGCGCGGGCACACCGACCTGGAGTCCCT
CTCCTTCGAGTGCTTCACCCCGCAGGTACCCTTCGCCGCGCTCGAGGCTCTGGTAGCGCG
CTCGCCGCGCCTCCGCCGCCTGCGCGTCAACCAGCACGTCTCGCTCGGGCAGCTGCGCCG
GCTCATGACGCTCACGCCCCGCCTCACGCACCTCGGCACGGGCTCGTTCCGGCCGGGGGA
CGGCGCCGACGACGAGGGGCTCGACTTCGGGCAGATGCTGACCGCCTTCGCGTCCGCCGG
CCGGGCCAACTCGCTGGTCTCGCTGTCCGGCTTCCGTGATCTCGCGCCCGAGTACCTGCC
GAC

Homology of Contig U35_12331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08850.1	604	3e-55	protein\|AUXIN SIGNALING F-BOX 2, putative, expressed
Brachypodium v1_2	Bradi1g72070.1	604	3e-70
Arabidopsis v10	None