barSeed - Barley Seed Development Database

Probe CUST_12007_PI390587928

Source Contig U35_24315

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12007_PI390587928	Hv_44K_v2	CGACATATTTCATTTGGCTGGTCGGCAGCTGGCATATATGCAGAAGTCCCCTTTTTCAAA	691	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.898	1.372	1.594	1.341	0.851	0.968
Raw	145.814	345.855	347.717	479.523	102.141	127.006

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362443	2298	2e-23	2028 - 2085	100	58 / 58	plus	ABC21119
MLOC	MLOC_74621.1	2074	2e-23	1805 - 1862	100	58 / 58	plus	ABC21119
MLOC	MLOC_74621.2	2003	2e-23	1734 - 1791	100	58 / 58	plus	ABC21119
JLOC1	JLOC1_49741.2	2105	1e-23	1857 - 1914	100	58 / 58	plus
JLOC1	JLOC1_49741.1	1982	1e-23	1734 - 1791	100	58 / 58	plus
Harvest21	ABC21119	765	3e-25	692 - 751	100	60 / 60	plus	ABC21119
Harvest35	U35_24315	765	3e-25	692 - 751	100	60 / 60	plus

Contig Sequence (765 bp)

>U35_24315 765 Hv_44K_v2
TGTTGGAAGGTTCTGCGTTGACACACTAGGCGGGGATGGAAATGTTTGGCTGCTATTCTG
GGAAATCCTTTGTGCCATCCATTTACTTGGAAACAGCTACCCGTCTCTTCTATATCGTGG
CCTGTATGGTCCTATTTCTGTGACACACAGACCCAGGGCTGTTGGTTTGCCGTATTGGGT
TCGCCGGTACATATTTTACGCTGTGCTGTCCTTGATCCTTCCATGCTTGGCTGGTTTGTT
GCCGTTCGCATCTCTATCAGACTGGAGGGAACATGCAGTTGAATATATGATGTCCAGATT
CACTGGAAATGACATTGAGACTTGAGAGATCAGATGTGGCCATTAGCATGGGAGCAGAAA
CCTGAGAAGTTTCATCAGGCAGAGCAACAATGAGCACATGCGCAAGATTGGACCTGTTTT
GTGAAGATGAAGTCAATGTAGTAAAAGTGTCATCTTCTGGCCTGAATCTCCCTTCCTACT
TAATCATCTGGTGAACCAGGTTTTGATGGTTGGATTCTTTTGTCACAGCCGTTATGTAAT
TCGCCTATGTAATTTCTTCCCTTTGGGAAATACATCATCATGGATGGTTGTGCTCTTTAG
CTGTCTATGTGTTATGGCTCTGATGTTGTGTGGACATTGCCCTTAGTGAATCCATTGGTT
TATTCTTTTGTCCTCAGCAACATCATGTGTTCGACATATTTCATTTGGCTGGTCGGCAGC
TGGCATATATGCAGAAGTCCCCTTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g57717.1	521	1e-63
Arabidopsis v10	None