barSeed - Barley Seed Development Database

Probe CUST_12005_PI390587928

Source Contig U35_24317

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12005_PI390587928	Hv_44K_v2	TTGGTTATGGTGGTGGCATCCTGATGATAACGCATGAACGCAATGCCAAATGATGTCGAT	579	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.905	1.903	1.124	0.770	0.280	0.411
Raw	1759.530	2813.213	1436.800	1616.315	198.794	316.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10967.1	2723	2e-24	2479 - 2538	100	60 / 60	plus	None
MLOC	MLOC_10967.2	2797	2e-24	2553 - 2612	100	60 / 60	plus	None
JLOC1	JLOC1_7220.2	1138	8e-25	910 - 969	100	60 / 60	plus
JLOC1	JLOC1_7220.1	2707	8e-25	2479 - 2538	100	60 / 60	plus
Harvest21	ABC33593	640	1e-23	580 - 640	98	60 / 61	plus
Harvest35	U35_24317	768	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (768 bp)

>U35_24317 768 Hv_44K_v2
GGCTAGGAAGAGCTTTGAAAGCTCCGAAGGAGACCATATACGTTGGTGAACGTATATCGA
GCCGCTGCAGAATGCTTGGAGAAGAGCAAAAACGCAAATGCCAAAGAGAAAACAATGGAA
AAAGCTTTGAACAGATGGTGCTTTGAAAACTTTATCAATTACCGCTCTCTAAGGCATGCT
CGTGATGTTCACAGCCAAATCCAGGGCCATGTCCAACAAATGGGGCTTAACCTGTCATCG
TGCGGCGACGACATGGTCCAGTTCCGGAGGTGCCTCACTGCCGCTTTCTTCCTGAACGCT
GCGATGCGGCAGCCAGACGGATCATTCAGGGCTCTGGCGACGGGGCAGAGCGTGCAGATG
CACCCTTCGTCGGTGCTGTTCCGGACCAAGCCGGACTGCGTCATCTTCAACGAGCTGGTC
CGGACGACGCAGAACTACGTCAAGAACCTCACCCGGATAGACCCGCTGTGGCTGGCCGAG
CTCGCCCCGCAGTACTACGCCACCGAGGACCAGTTTTCCCCTCTTCTATTTACATTAACA
ACAATCCAAAGTAGCCTGTAGCCATAGTTCCTTGTAACGTTGGTTATGGTGGTGGCATCC
TGATGATAACGCATGAACGCAATGCCAAATGATGTCGATGCCAGGCCGCTGTAAGGTGGG
GAGAATCTTGATTGATTGTCTTTGCAGTTTATCATCCAAACTGGGATGTGAGACCGTGAG
TCACCATCACGTTAGCATGACCCAAAAATGAACCTAGTTTGGACCAAC

Homology of Contig U35_24317 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09280.1	855	1e-92	protein\|ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g16730.1	698	2e-100
Arabidopsis v10	AT1G26370.1	717	5e-56	RNA helicase family protein \| chr1:9122030-9125368 REVERSE LENGTH=717