- Probe CUST_11994_PI390587928
- Source Contig U35_48806
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11994_PI390587928 | Hv_44K_v2 | TGATGGATCGCCTGTAGAACAAGAACGTGAATCAAGTGAACTTGTGATGTATTGAAAAAA | 11 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.722 | 2.738 | 1.850 | 1.053 | 0.424 | 0.432 |
| Raw | 3994.407 | 23513.220 | 13416.033 | 12349.700 | 1703.880 | 1892.203 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361923 | 2163 | 9e-22 | 2087 - 2141 | 100 | 55 / 55 | plus | ABC05164 ABC44958 |
| Harvest21 | ABC05164 | 2164 | 3e-25 | 2056 - 2115 | 100 | 60 / 60 | plus | ABC05164 |
| Harvest35 | U35_48806 | 537 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_1469 | 754 | 3e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37398 | 559 | 1e-23 | 11 - 70 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_36474 | 197 | 8e-21 | 104 - 158 | 98 | 54 / 55 | plus | |
| Harvest35 | U35_1468 | 2177 | 8e-21 | 2095 - 2149 | 98 | 54 / 55 | plus |
Contig Sequence (537 bp)
>U35_48806 537 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAATACATCACAAGTTCACTTGATTCACGTTCTTGTTCTACAG GCGATCCATCACCCCCGCCACATGCTCGGGCCGCGAGCTCCATCCCACGCACACGCACAC ACAACAACACTGAAGAAACGTACTACAACACGTACGTCTCGTTGTGGTAGATCACCTCCT CGATGGCGTCGATACCATCCTGGACAGTGAAATGGAACTCGTGATGGATGGTTCCCAGAT AGTCAGCAACCTCTCTCGCGGCCTTCAGGTCAGGTGACCCCTCCAGGCCAACGACAAAGG AGTGGAGCTCAGTTCCAAACTTCTTGGCGGCTTCAGTCTCGATGAGATGGCGCTTGGTCA CAGAGGCGACGAGGGAGGAGTCGAGGCCACCGGAGAGGAGAACGCCGAAGGGCACGTCAG TCATGAGCCTCTTGATGACGGCCTTCTCGAATGCCTCCCTGAGGATGAGGGGCTGGTACG GCGTCGCCGGGACGTGCTCGGCGAACCACTGTGGGTTGTACCACCGCCGGAACCCTC
Homology of Contig U35_48806 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g18130.2 | 489 | 2e-63 | protein|asparagine synthetase, putative, expressed |
| Brachypodium v1_2 | Bradi1g65540.1 | 601 | 1e-67 | |
| Arabidopsis v10 | AT3G47340.1 | 584 | 7e-53 | | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584 |