barSeed - Barley Seed Development Database

Probe CUST_11983_PI390587928

Source Contig U35_24858

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11983_PI390587928	Hv_44K_v2	ATAGTGTAACTTCACAGTTGGCTCAGCAACAGGAGTTCAATCTGAAGAAACCTTCCGCCT	451	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12009.1	2646	7e-23	1264 - 1323	98	59 / 60	minus	ABC14139 ABC21126
JLOC1	JLOC1_8015.2	2889	4e-23	1279 - 1338	98	59 / 60	plus
JLOC1	JLOC1_8015.1	2877	4e-23	1267 - 1326	98	59 / 60	plus
Harvest21	ABC23537	595	3e-25	452 - 511	100	60 / 60	plus
Harvest35	U35_24858	597	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_24858 597 Hv_44K_v2
GTTCTCTTCCTGCAAGAAGCTATCAAGGGAATCGTGGGCGAGTTCAGTATGCCGAAAGAT
GCTGAGATATTTGACCGCAGTTCGCCGATATACCAGTTCCAATGGATATATGTCAATGGC
CTACTTGGGGTTATCTTCTCAATTGGCCTGCTATACAGTGCACTCAAGACTAGGCGGGCA
AGGTCATGGCTGTATGGTATAGGATGGCTTAGGAGCTTCATTGCCGATTATGGTGTCCCG
CTTATGGTGATCGTGTGGACGGCATTTTCGTACGCGCTACCGAGCGGGGTCCCTTCAGGA
GTGCCTAGGAGACTCTTCAGTCCACTTCCTTGGGAGTCAAGTTCATTGGGTCATTGGACC
GTAGCAAAGGATTTGTTTTCTGTCCCTCCGGCATATATATTTGCAGCCATCGTGCCTGCT
TTGATGGTTGCGGGACTGTACTTCTTTGATCATAGTGTAACTTCACAGTTGGCTCAGCAA
CAGGAGTTCAATCTGAAGAAACCTTCCGCCTACCATTACGACATTTTGGTACTTGGATTC
ATGGTCCTACTGTGTGGTTTAATTGGCATTCCTCCAGCANATGGAGTACTTCCTCAG

Homology of Contig U35_24858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08020.1	673	8e-119	protein\|boron transporter protein, putative, expressed
Brachypodium v1_2	Bradi2g04690.2	525	1e-124
Arabidopsis v10	AT1G15460.1	683	1e-101	\| Symbols: ATBOR4, BOR4 \| HCO3- transporter family \| chr1:5310196-5313376 REVERSE LENGTH=683