barSeed - Barley Seed Development Database

Probe CUST_11980_PI390587928

Source Contig U35_36832

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11980_PI390587928	Hv_44K_v2	GTAGTATGTGCAAGTGAATGTTTTATGTGCGTTTTTAATAATAAAGGGAGCATTGGTGAC	283	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.528	2.923	1.311	0.640	0.268	0.430
Raw	10744.433	6896.740	3062.640	2199.417	361.269	619.149

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19348.1	416	7e-23	2 - 61	98	59 / 60	minus	ABC32240
Harvest21	ABC32240	360	3e-25	284 - 343	100	60 / 60	plus	ABC32240
Harvest35	U35_36832	360	3e-25	284 - 343	100	60 / 60	plus
Harvest35	U35_36604	451	1e-23	18 - 77	98	59 / 60	minus

Contig Sequence (360 bp)

>U35_36832 360 Hv_44K_v2
TTCTCCTTCTGAGCACCAGCCTTCGAGTTCATGGAGGAGAGGACGCCAACATCAAAACAA
ACAGTATCCCAGTACAGCCAGCGAGAAGGGTTTTGCCAGCAACTTACTTTCCTCAGACAA
CCGTATCAAGACAGTGCGACCTGTGCCACTGCAGCCATGATAACGATAAAACTTCATATG
CAACAATATGCTGCAATGAGTTTACTTGCAATGATCCGGCACATCCAAGTGGCAGTTGTA
CTGTTAAGAAAGTCTCATGCGGCTGTGACGTGAAAACATGTAAGTAGTATGTGCAAGTGA
ATGTTTTATGTGCGTTTTTAATAATAAAGGGAGCATTGGTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_36832 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None