barSeed - Barley Seed Development Database

Probe CUST_11978_PI390587928

Source Contig U35_36835

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11978_PI390587928	Hv_44K_v2	GCAATCCCGTGCCATCTTACCAATTCATGTACTCCCATTGTAGTATGGGCTAAGACTGAA	507	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	16.573	13.068	2.379	0.187	0.056	0.050
Raw	2033.213	2768.225	384.750	50.696	3.498	3.529

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57380.1	686	7e-23	14 - 73	98	59 / 60	minus	None
Harvest21	ABC32242	570	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_36835	570	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_36835 570 Hv_44K_v2
GCTGTCCAGGACCGCTGCCCCAACAGCCACGCCGACGGCGTACGAAATGCTAGGGCGGTA
TGGCTTCCCGCCCGGCATCCTTCCGAAGGGAGTGCGTGACTACGAGCTCCGACCGGACGG
CTCCTTTGAGGTACACTTCCCTGAGGAATGCAAATTTCGTGTTGACGGCAAGTACGATAT
CCACTACAACAGTCGGGTTGCCGGGAACGTCCATAATGAAACAATCAACGGCCTCGAAGG
AATTAAGGTGAAGGTCTTTATTGCGTGGATCAACATACGGGAGGTCGGCCGCGACGGCGA
TGAGCTCACTCTGCATGCCGGGGCAATATCCAAGTCATTCCCGGTCGATGTTTTCTCCTC
TAGCCCTAAGTGTAACTGAGGCTCGACTAAAAGATCGACACAATGCCTCTTCAATCATGT
CATGTCCCTTGACGTTTTCTTCAATCACGTCGCTTGATGTTTTCTTCTTTCTTTGTAGAT
ATGATTATGCATGTTGCTGCTTGATTTGCAATCCCGTGCCATCTTACCAATTCATGTACT
CCCATTGTAGTATGGGCTAAGACTGAATGA

Homology of Contig U35_36835 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None