barSeed - Barley Seed Development Database

Probe CUST_11970_PI390587928

Source Contig U35_12882

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11970_PI390587928	Hv_44K_v2	TGCTTAGAGCATCTCCAACAGCCGCGCTTCGCGCCGCGCCCAAAAAATGTATTTACAGCG	407	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.448	2.228	1.228	0.682	0.667	0.712
Raw	808.979	1054.320	540.749	434.579	159.620	189.281

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32807.1	1669	6e-21	128 - 185	97	56 / 58	minus
Harvest21	ABC24924	550	3e-25	84 - 143	100	60 / 60	minus	ABC24924
Harvest35	U35_12882	550	3e-25	408 - 467	100	60 / 60	plus

Contig Sequence (550 bp)

>U35_12882 550 Hv_44K_v2
GCTCAAAATCAACTCAAACAAAAGCTTCCGCCATTCTCCGCCGCTCCTCGCTCTCGCTCT
CCCCATTCATTCCCCATTCAGCTCCGCCGCTCCTCGCTCTCGCTCTCCCCATTCATTCCC
CATCCAGCTCCGCCGCCGGGGATGGTTCTGATCGAGCGCACGCCGTCCGCGGGGGCAGCC
CCCTTCAGTCCACTCCAGAGATCAACTCCTAGGGTTTCGTTGGAGGCGTCTCCGCCGTCC
GACCCCATCCTCCCGTACCTCTGGTAGCGCCCTCCAGATCTACCTCTCTACTCTGCAAAT
TTACTTCTGCCTAGACCTGCCTGCTTACATCTTCTGATCTTCGCGCGATTCTGCCTCAGC
TGTGTGCGTGTGTGTATCTGAGGTTTCGCCTCGGTTTGTGTATGCATTGCTTAGAGCATC
TCCAACAGCCGCGCTTCGCGCCGCGCCCAAAAAATGTATTTACAGCGCGCGCGCCGGCTG
GTTTAGCGCAGGGATAGGCGCTGGCTCCAACAGCCCCGCTATAATGCAGCGCGAAAAAAA
AAAAAAAAAA

Homology of Contig U35_12882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None