barSeed - Barley Seed Development Database

Probe CUST_11960_PI390587928

Source Contig U35_12887

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11960_PI390587928	Hv_44K_v2	CAGTCTAGATGTTGTGCCTGGTGCTATTGGAGATATAACAGGATTAGAAGCATCTACAAA	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66580.1	1556	6e-24	1043 - 1101	100	59 / 59	plus	ABC24555
JLOC1	JLOC1_43890.1	1276	3e-24	1025 - 1083	100	59 / 59	plus
Harvest21	ABC24555	572	3e-25	9 - 68	100	60 / 60	minus	ABC24555
Harvest35	U35_12887	572	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_12887 572 Hv_44K_v2
GCGGAGGCGCCGGAGGACTTCGAGGCGTACGTGACGCGGCTGCCCAAGGCGGAGGACTTC
GGACTGGAGGGGTTCCAGGAGGTGCCTCTGGAGGTGCTGGCCGAAGCCGGAGGAGGGGTC
AGCATCTGGGACCTCTCCATCGGCCCCGACATGATGGCAGCGGCAGCCGATTCTTCAGCT
GCTGCCTGCACCGTCCCGCAACAGCGGCTGCAGCAACCCACCTGCTGAGGTGCAGATCCA
CATAGAACGGAGTGGCGATGATACATACTCCTATAATATATACTCCGGAGTGACATGGAA
CGGAGTATATATAGTACATATACCGCATGCGGCATGCATGCTAGTTAACGGCGGTGGTGC
ATGCAGCTGGATAGCTAGTTTAGTTGAGTGTTTCCTTTTTCTCCATCGTTGCAGTAGCAT
ACTATAGCTTTATATCGGCGGCAGGTGGGCGTGCAAGTGTGTGTGTGATATATTCGTGCA
TGGGAGAAGGGGTAATGAAATGATCAGTCTAGATGTTGTGCCTGGTGCTATTGGAGATAT
AACAGGATTAGAAGCATCTACAAAAAAAAAAA

Homology of Contig U35_12887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None