barSeed - Barley Seed Development Database

Probe CUST_11944_PI390587928

Source Contig U35_36844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11944_PI390587928	Hv_44K_v2	TGTGGAAGGAAAAATTGTGTGGGATAAAGGTTTAGGAGAAGCTACTTGCAGAAAGTATTT	462	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368039	2193	2e-24	1011 - 1070	100	60 / 60	plus	None
MLOC	MLOC_37279.4	1189	2e-24	338 - 397	100	60 / 60	plus	None
MLOC	MLOC_37279.1	679	2e-24	442 - 501	100	60 / 60	plus	None
MLOC	MLOC_37279.5	991	2e-24	234 - 293	100	60 / 60	plus	None
MLOC	MLOC_37279.2	1297	2e-24	252 - 311	100	60 / 60	plus	ABC23245
MLOC	MLOC_37279.3	1334	2e-24	289 - 348	100	60 / 60	plus	None
JLOC1	JLOC1_24126.2	1319	8e-25	266 - 325	100	60 / 60	plus
JLOC1	JLOC1_24126.1	1356	8e-25	303 - 362	100	60 / 60	plus
Harvest21	ABC32253	584	3e-25	463 - 522	100	60 / 60	plus
Harvest35	U35_36844	584	3e-25	463 - 522	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_36844 584 Hv_44K_v2
GGGATGGCCTTGATAGAAGCTTCTTTAATAATGGTGATGATCCCGATAGAAGTTTCTATG
AGAGAGATGGCACTGACTATAATCACGAGAGTGACGACGAGCCCCCGCGGAAGAGGTCTG
AAGATATTATACTGACAAGGGCTCAAAGCGGCTTTGCATGTAGAGAAAGCCTGGTTAAGG
AGACTAAAAAAGTCGTTCGCTCAGAGGACGATCTTGGCAATAAGATGATCAATCAGTATG
TTCACCTGGGCAAGATCGGTGCTGGAAGCTACGGCAAAGTGGTTCTATACCGAAACATCG
AAGATGGGAAGTTATATGCAGTGAAGGTGCTGAATAAACCTCACATGATGAAAGTACGCG
TCGTACGGTCAGAGACCGCCATGACAGATGTTATTCGGGAAGTATCCCTCATGAAAATGT
TGAGTCATCCCAATATCGTAAATCTCATTGAGTTCTTGAGTATGTGGAAGGAAAAATTGT
GTGGGATAAAGGTTTAGGAGAAGCTACTTGCAGAAAGTATTTGCGGGACATTATTTCTGG
TGTTATATATCTTCACTCTCATAACATTATTCATAGTGATATCA

Homology of Contig U35_36844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50330.1	427	2e-77	protein\|CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g11340.2	367	2e-90
Arabidopsis v10	None