barSeed - Barley Seed Development Database

Probe CUST_11943_PI390587928

Source Contig U35_36845

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11943_PI390587928	Hv_44K_v2	CAAATAGTTGCCCAGAATAAAGAGAATATGGTGCTTGAACTACAGCAAAGATCAATTGAA	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1297.3	1556	2e-24	462 - 521	100	60 / 60	plus	ABC20393
MLOC	MLOC_1297.2	2146	2e-24	900 - 959	100	60 / 60	plus	ABC20393
MLOC	MLOC_1297.1	2374	2e-24	1040 - 1099	100	60 / 60	plus	ABC20393
JLOC1	JLOC1_795.1	2264	8e-25	925 - 984	100	60 / 60	plus
Harvest21	ABC32254	619	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_36845	619	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_36845 619 Hv_44K_v2
GGCAAAAGGGCCCTGGAACTTGTTTATTTGTTGGTCAATGATACCAATGTAAAGCCTCTG
ACCAAAGAGCTCGTCGACTACTTGCAAGTAGCTGATCCAGACTTCAAAGAAGATCTCACA
GCCAAGATATGCTCCATAGCTGAAAAGTTTTCTCAAGAAAAGTTATGGTATCTTGATCAG
ATGTTCAAGGTTTTATCCCTGGCTGGAAATCATGTGAAAGATGATGTGTGGCATGCCCTT
ATTGTTGTAATAAGCAATGCGTCCGAACTTCAAGGATACTCAGTGAGATCATTATACACG
GCTTTACAAGCATACAGTGAACAGGGAAGTTTATTGAGAGTAGCTGTTTGGTGCATTGGT
GAATATGGTGAAATGCTAGTGAACAATGTCGGCATGCTTGAAGCTGAGGGACCAATCACG
GTAACAGAATCCGATGCTGTTGATGCTGTGGAGCTAGGTCTTAACCGTTATGCTGCAGAT
GTGACAACTAGGTCTATGTGTCTAGTTGCTCTTTTGAAGCTCTCCTCACGGTTTCCATCT
ATGTCGGAGAGGATAAAACAAATAGTTGCCCAGAATAAAGAGAATATGGTGCTTGAACTA
CAGCAAAGATCAATTGAAT

Homology of Contig U35_36845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g07090.1	871	2e-110	protein\|AP-1 complex subunit gamma-1, putative, expressed
Brachypodium v1_2	Bradi3g54597.1	886	8e-124
Arabidopsis v10	AT1G23900.1	876	1e-91	\| Symbols: GAMMA-ADAPTIN 1, Gamma-ADR \| gamma-adaptin 1 \| chr1:8441379-8447152 FORWARD LENGTH=876